Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0255 ATGACCATCGACTTGGATTCGATCGCTCGCCGAGTCGAGGTTGATAATCGCATTCCCATCCGCTATTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAACTATCTACCGGGAGGAGCATAATGTAGTTGACTTGTACATCATTCTCCTTAGATTTTTAAGTTTGGTTTCTGAAACTATACCATATCATCGAGATTATCAAGCTTCACTGCCCAATGAAAGAGCAGCATATAAGAAGAGATCGCGAGCTGTGTTGGATGAGCTTGAATCTTTGAAGCCCGAATTTAAACTCCGGGTGGAAAAAATGAATGACTCACATGTAAAAGCTCTATTGCCTGAAGAAAATGGTTTCAATAAGGCTTTGCAGAGTTCAGTGAATTCATCTTTGCAATGGCCGGCTGTCAATAAACAGCCTGCTGCGGGATTCAGTTCACAGTCTTCATGGAATTATGATAATATGTTATCTTTAGATTCCTGGCCTATTGACAAGCAGTTTCAGAAACTATCTGTTAGTCTACCCCCTCCAAATAAGGAGACTTTGTCCAGACACTCATTTTTAGGACCAAATGGCCTTCGGGGCCAATGGCTTGGACCTAGTGCGGAAATAAAGGTTCAATATCCAAGCAGTGGTGAGCTCACACAGGCCAAGGATTCAAGCCCGAATCAGGCTGGGCTATATGATCTTGTGGCAATTAAAGATGGCGATCAAGGACCAGTTACATCCACAATGGACTCAGTTCTCTCTTTGGATGATGGAAGATGGTTGCGTCCTGCTGTGGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGGGAGGACCCCTTACAATTGCTCAACATCAAGCAACCTTTGCCGCCTCCTATTCTTGCTCAGGTGTATCCAGAACGTGTCCCCATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCAGCTAAATCGTCTCATGATTCTAGACTTGATGCAACTACATATCAACACCTACATATACCTGTCAAAATGATGGAAGAGTTTTTAAGATTGGCTTCGGAAAACACAAGGAAAAACTTGGAGACATGTGGTGTTCTTGCAGGGTCCCTGAAAAAAAGGGTATTTCATATCACAACACTTATAATCCCAAAGCAAGAATCAACTTCAGACTCGTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTAGGTTGGATACATACACACCCATCTCAGACTTGTTTCATGTCTTCTGTGGATCTACACACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCTATTGTCATGGCCCCTACAGATACTACAAGTCCACATGGCATATTTCATCTGTCTGATCCGGGTGGTGTGTCTGTCATTCGTAACTGTCAGCAACGTGGATTTCATCCCCATGAGGAGCCTGAGGATGGAACTCCAATATATGAGCACTGTTCTCATGTCTATATGAATGCTAACTTGAAGTTCGATGTTGTTGACCTTCGAGAGCGATGA 1515 0.4317 MTIDLDSIARRVEVDNRIPIRYYYRIADNLLKQATIYREEHNVVDLYIILLRFLSLVSETIPYHRDYQASLPNERAAYKKRSRAVLDELESLKPEFKLRVEKMNDSHVKALLPEENGFNKALQSSVNSSLQWPAVNKQPAAGFSSQSSWNYDNMLSLDSWPIDKQFQKLSVSLPPPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSGELTQAKDSSPNQAGLYDLVAIKDGDQGPVTSTMDSVLSLDDGRWLRPAVESCSPVVTESREDPLQLLNIKQPLPPPILAQVYPERVPIPPSKVADPRPGPAKSSHDSRLDATTYQHLHIPVKMMEEFLRLASENTRKNLETCGVLAGSLKKRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGTPIYEHCSHVYMNANLKFDVVDLRER* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0255 504 MobiDBLite consensus disorder prediction 300 320 - -
Gso17g0255 504 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 324 431 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso17g0255 504 Gene3D - 2 126 - -
Gso17g0255 504 PANTHER AMSH-LIKE PROTEASE 3 502 - -
Gso17g0255 504 CDD MPN_AMSH_like 325 502 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Gso17g0255 504 Gene3D Cytidine Deaminase, domain 2 312 504 - -
Gso17g0255 504 SUPERFAMILY JAB1/MPN domain 327 458 - -
Gso17g0255 504 ProSiteProfiles MPN domain profile. 328 458 IPR037518 -
Gso17g0255 504 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 3 502 - -
Gso17g0255 504 SUPERFAMILY USP8 N-terminal domain-like 4 104 - -
Gso17g0255 504 SMART pad1_6 327 455 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso17g0255 504 Pfam USP8 dimerisation domain 4 99 IPR015063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0255 Gso-Chr17 2310208 2318446 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0255 K11866 - gmx:100806590 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0255 17 2310208 2318446 Gso17g0255 17 2310208 2318446 ECH
Gso7g2047 7 44427930 44437571 Gso17g0255 17 2310208 2318446 GST