Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1520 ATGGCAGTGCTATTTGCAACTCATGTTCTTCTCTTGATATTGTCCACTGCTACAACTCTCCAGTTCAGTGCAAGCAAGGCAGCAAGGCTCAATATGACTTGCAGTGAGAAGGAAAGAAATGCACTCCTCAGCTTCAAGCATGGACTAGCAGACCCTTCAAACAGGCTTTCATCGTGGTCTGACAAATCTGATTGCTGCACATGGCCAGGGATTCACTGCAACAACACTGGTCAGGTCATGGAAATCAATCTTGACACACCTGTGGGCTCTCCCTATAGGGAGTTGAGTGGAGAGATTAGTCCTTCTTTGCTTGAACTAAAATATTTGAATCGGTTGAACTTGAGTTCAAATTATTTTGTTCTTACTCCAATACCAAGCTTCCTAGGCTCAATGGAGAGTCTGAGATACTTGGACCTTAGCTTAAGTGGGTTCATGGGATTAATCCCTCATCAACTAGGAAACCTCTCAAACCTGCAGCACCTTAATCTTGGATACAATTATGCTCTTCAGATAGATAACCTTAATTGGCTATCAAGGCTATCTTCCTTGGAGTACCTTGATTTGAGTGGCTCAGACCTTCATAAACAAGGTAACTGGCTTCAAGAACTGAGTTCACTTCCATCTCTTTCAGAATTACACTTGGAGAGCTGTCAAATTAATTACTTAGGACCACCAAAAGGAAAAACCAACTTCACACATCTCCAAGTCCTTGATCTTTCAAATAACAATCTCAATCAGCAAATCCCTTTATGGCTATTTAATCTCTGCACAACCCTTGTCCAACTTAATTTACACAGTAACCTTTTACAGGGAGAAATTCCACAAATAATATCAAGCCTTCAGAACATAAAAAATCTAGACCTGCATAACAACCAACTCAGTGGGCCACTTCCAGATTCATTAGGCCAACTTAAGCATCTTCAAGTTCTAGATCTAAGTAATAATACCTTTACATGTCCAATTCCCTCACCATTTGCAAACTTGTCATCCTTGAGAACTTTAAACCTGGCTCACAACCGACTGAATGGAACCATTCCTAAGAGTTTTGAGTTCCTCAAAAACCTGCAGGTATTAAATCTTGGAGCTAATTCTTTGACTGGTGATATGCCTGTAACTCTTGGAACTCTCTCAAATTTTGTGGCGTTAGACCTTTCATCTAATTTGTTAGAAGGATCTATAAAAGAGTCAAATTTTGTAAAACTTTTGAAATTAAAGGAACTACGTTTGTCTTGGACAAACTTGTTCCTCAGTGTCAACTCTGGATGGGTTCCTCCTTTTCAGCTTGAATATGTTTTACTGAGCTCCTTTGGAATAGGTCCTATGTTTCCAGAATGGCTAAAAAGGAAAAGTTCTGTAAAGGTTTTGACAATGTCTAAGGCAGGTATTGCAGACTTGGTTCCAAGTTGGTTTTGGAATTGGACTTTGCAAATTGAATTCCTGGATCTGTCAAACAATCTGTTAAGTGGAGACCTATCTAACATCTCTCTAAATTCCAGCGTCATAAATTTGAGTTCTAATTTGTTCAAGGGTAGATTGCCAAGTGTGTCTGCAAATGTTGAAGTGCTGAATGTTGCCAATAACTCAATTTCCGGAACAATTTCTCCCTTTTTATGTGGAAAGGAAAATGCTACTAATAAGTTAAGTGTGCTTGATTTTTCAAATGATGTCTTGTCTGGTGAGCTTGGTCACTGTTGGGTGCATTGGCAGGCTTTGGTGCATTTGAACTTGGGTAGTAACAATTTGTCTGGTGAAATTCCAAACTCCATGGGGTATCTGTCTCAACTTGAGTCTTTGTTGTTAGACGACAACCGCTTCTCTGGATATGTTCCTTCAACACTGCAAAATTGCTCTACAATGAAATTCATTGACATGGGCAATAACCAACTTTCTGACACAATACCAGATTGGATGTGGGAAATGCAATATCTAATGGTTCTTCGTCTAAGATCCAACAATTTCAATGGCAGCATTACTCAAAAGATGTGTCAACTTTCTTCCCTTATAGTGCTGGATCTTGGCAATAACAGCCTGTCAGGATCCATTCCAAATTGTTTGGATGACATGAAGACAATGGCTGGTGAAGATGACTTCTTTGCCAACCCTTTAAGTTATTCATATGGCTCTGACTTCAGTTATAATCACTACAAGGAAACTCTTGTCTTAGTTCCCAAAGGAGATGAGTTAGAGTACCGAGACAATCTGATATTGGTGAGAATGATTGATCTTTCAAGTAATAAGCTGTCTGGAGCAATTCCATCTGAAATTTCCAAGCTATCTGCTTTGCGGTTTTTGAACTTGTCTAGAAATCATCTGTCTGGAGAGATACCAAATGACATGGGAAAAATGAAATTGTTAGAATCCCTTGATCTCTCACTAAACAACATTTCAGTTCAAATTCCTCAAAGCTTATCTGATTTGTCCTTCCTCAGTTTCCTGAATCTATCATACAACAACTTATCAGGCAGAATTCCCACGAGCACCCAACTTCAGAGCTTTGAAGAACTTAGCTACACTGGAAATCCTGAGCTTTGTGGTCCTCCTGTAACAAAAAATTGCACAGACAAGGAAGAGTTGACAGAGAGTGCTTCTGTTGGACACGGTGATGATAATTTCTTTGGAACATCAGAGTTTTATATTGGTATGGGAGTTGGATTTGCAGCAGGATTTTGGGGTTTTTGCAGTGTTGTTTTCTTCAACAGAACTTGGAGGCGTTCTTATTTTCATTATCTTGACCACTTGAGAGATCTGATTTATGTGATAATAGTTTTGAAGGTAAGAAGGTTACTTGGGAAATTATGA 2799 0.3923 MAVLFATHVLLLILSTATTLQFSASKAARLNMTCSEKERNALLSFKHGLADPSNRLSSWSDKSDCCTWPGIHCNNTGQVMEINLDTPVGSPYRELSGEISPSLLELKYLNRLNLSSNYFVLTPIPSFLGSMESLRYLDLSLSGFMGLIPHQLGNLSNLQHLNLGYNYALQIDNLNWLSRLSSLEYLDLSGSDLHKQGNWLQELSSLPSLSELHLESCQINYLGPPKGKTNFTHLQVLDLSNNNLNQQIPLWLFNLCTTLVQLNLHSNLLQGEIPQIISSLQNIKNLDLHNNQLSGPLPDSLGQLKHLQVLDLSNNTFTCPIPSPFANLSSLRTLNLAHNRLNGTIPKSFEFLKNLQVLNLGANSLTGDMPVTLGTLSNFVALDLSSNLLEGSIKESNFVKLLKLKELRLSWTNLFLSVNSGWVPPFQLEYVLLSSFGIGPMFPEWLKRKSSVKVLTMSKAGIADLVPSWFWNWTLQIEFLDLSNNLLSGDLSNISLNSSVINLSSNLFKGRLPSVSANVEVLNVANNSISGTISPFLCGKENATNKLSVLDFSNDVLSGELGHCWVHWQALVHLNLGSNNLSGEIPNSMGYLSQLESLLLDDNRFSGYVPSTLQNCSTMKFIDMGNNQLSDTIPDWMWEMQYLMVLRLRSNNFNGSITQKMCQLSSLIVLDLGNNSLSGSIPNCLDDMKTMAGEDDFFANPLSYSYGSDFSYNHYKETLVLVPKGDELEYRDNLILVRMIDLSSNKLSGAIPSEISKLSALRFLNLSRNHLSGEIPNDMGKMKLLESLDLSLNNISVQIPQSLSDLSFLSFLNLSYNNLSGRIPTSTQLQSFEELSYTGNPELCGPPVTKNCTDKEELTESASVGHGDDNFFGTSEFYIGMGVGFAAGFWGFCSVVFFNRTWRRSYFHYLDHLRDLIYVIIVLKVRRLLGKL* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1520 932 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Gso16g1520 932 Gene3D Ribonuclease Inhibitor 298 398 IPR032675 -
Gso16g1520 932 SUPERFAMILY RNI-like 93 322 - -
Gso16g1520 932 Gene3D Ribonuclease Inhibitor 399 855 IPR032675 -
Gso16g1520 932 PANTHER LRR RECEPTOR-LIKE KINASE 260 393 - -
Gso16g1520 932 PANTHER LRR RECEPTOR-LIKE KINASE 353 928 - -
Gso16g1520 932 PANTHER LRR RECEPTOR-LIKE KINASE 9 280 - -
Gso16g1520 932 Gene3D Ribonuclease Inhibitor 34 195 IPR032675 -
Gso16g1520 932 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 353 928 - -
Gso16g1520 932 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 260 393 - -
Gso16g1520 932 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 9 280 - -
Gso16g1520 932 Pfam Leucine rich repeat 133 193 IPR001611 GO:0005515
Gso16g1520 932 Pfam Leucine rich repeat 323 365 IPR001611 GO:0005515
Gso16g1520 932 Pfam Leucine rich repeat 258 315 IPR001611 GO:0005515
Gso16g1520 932 SUPERFAMILY L domain-like 511 848 - -
Gso16g1520 932 SMART LRR_typ_2 206 227 IPR003591 -
Gso16g1520 932 SMART LRR_typ_2 782 806 IPR003591 -
Gso16g1520 932 SMART LRR_typ_2 352 376 IPR003591 -
Gso16g1520 932 SMART LRR_typ_2 758 781 IPR003591 -
Gso16g1520 932 SMART LRR_typ_2 280 304 IPR003591 -
Gso16g1520 932 SMART LRR_typ_2 592 615 IPR003591 -
Gso16g1520 932 SMART LRR_typ_2 231 255 IPR003591 -
Gso16g1520 932 SMART LRR_typ_2 328 351 IPR003591 -
Gso16g1520 932 SMART LRR_typ_2 664 687 IPR003591 -
Gso16g1520 932 SUPERFAMILY L domain-like 249 492 - -
Gso16g1520 932 Pfam Leucine Rich Repeat 666 686 IPR001611 GO:0005515
Gso16g1520 932 Pfam Leucine Rich Repeat 761 779 IPR001611 GO:0005515
Gso16g1520 932 Gene3D Ribonuclease Inhibitor 196 297 IPR032675 -
Gso16g1520 932 ProSiteProfiles Leucine-rich repeat profile. 157 178 IPR001611 GO:0005515
Gso16g1520 932 PRINTS Leucine-rich repeat signature 234 247 - -
Gso16g1520 932 PRINTS Leucine-rich repeat signature 328 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1520 Gso-Chr16 35557257 35560422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1520 27 907 Receptor kinase-like Gene Family AT2G15080 30.989 8.21e-96 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1520 - - gmx:106794149 1726.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1520 16 35557257 35560422 Gso16g1520 16 35557257 35560422 ECH