Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1495 ATGCCTTTCTCCATTTTCTTCTTCTTCTTCTTCAAGATGAAATCCTACATCTGGCTTCAAACTGTGGATGGTTCTATTCAGCAAGTAGAGGAAGAGGTAGCCATGTTTTGCCCCATGATATGCCAGGAAGTACTTCAAACAGGCATGGGATCTTCCAAAAACTATGCTATATCTCTTCCACAACGTGTCAATCCCGCAATCTTGGGATTGATACTTGACTACTGTCGGTTTCACCAAGTACCAGGACATTCTAACAAGGAGCGCAAAACTTTTGATGAGAAGTTTATTCGGATGGATACAAAGAAGTTATGTGAGTTGACATCTGCTGCCGACAGCCTCCAACTGAAGCCTTTGGTTGACCTGACCAGCCGAGCACTTGCTCGGATTATAGAAGGAAAAACTCCTGAGGAGATTCGTGAAACATTTCATTTGCCTGATGATCTCACTGAGGAGGAGAAGCTGGAGCCTCTGAGAAACATAACTGATGATCCACGAATTCGACTTCTAAACAGATTATATGCTAGAAAGAGGAAAGAACTAAAAGAGAGGAAGAAACTGAAGGATGTTGAGGTTGAGGAGGAACCAAAAGATGAGCGTTCAGTTGAAGATCTTCTATCATTTATTAATGGTGCAGATGGAGATATGAAGGGAACTAGAACAAATAAAAATAAAAAGAAGAATAGGAGAAGGAAAGACCATGCAAAGGATCTTTCTTCAAAAAATGAAAATGATAAGGACTTGAATCCTCTCCCTTCTGCATATCACAATGTCTATTTTGACAATGCCTTGGAGGCCTCTGCAAGTAAACACTCAAGGATGCAAAACCTTCCTGCTATTAGTTTTTCTCCAAAATTTGAAGTTATTGATGGAGATGTTGACGATGATTTAGATCCTGCAATGAAAGAGGAGCTTGACAGGGAAGTGGAAGATTTTGCACGAAGGTTAAATTCTGATTGGCCTGAAAGGATGCAAATTTTATCTTTGGGCCAAGACAGAAGACTAGTACCACCAATTTCTATGAATAGCAATGGTTCAACGCACCTGTATACAGCACTGGCAGGTAATTCAATTTCCAAGGTGAGTGGAAGTTAA 1092 0.4048 MPFSIFFFFFFKMKSYIWLQTVDGSIQQVEEEVAMFCPMICQEVLQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGHSNKERKTFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYARKRKELKERKKLKDVEVEEEPKDERSVEDLLSFINGADGDMKGTRTNKNKKKNRRRKDHAKDLSSKNENDKDLNPLPSAYHNVYFDNALEASASKHSRMQNLPAISFSPKFEVIDGDVDDDLDPAMKEELDREVEDFARRLNSDWPERMQILSLGQDRRLVPPISMNSNGSTHLYTALAGNSISKVSGS* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1495 363 Pfam Skp1 family, tetramerisation domain 17 79 IPR016073 GO:0006511
Gso16g1495 363 Pfam Skp1 family, dimerisation domain 116 153 IPR016072 GO:0006511
Gso16g1495 363 PANTHER OS03G0107000 PROTEIN 12 248 - -
Gso16g1495 363 MobiDBLite consensus disorder prediction 200 251 - -
Gso16g1495 363 Gene3D Potassium Channel Kv1.1; Chain A 10 160 IPR011333 -
Gso16g1495 363 SUPERFAMILY POZ domain 15 79 IPR011333 -
Gso16g1495 363 SMART skp1_3 14 115 IPR001232 GO:0006511
Gso16g1495 363 PANTHER SKP1 12 248 IPR016897 GO:0006511
Gso16g1495 363 SUPERFAMILY Skp1 dimerisation domain-like 90 157 IPR036296 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1495 Gso-Chr16 35186630 35194087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1495 - - gmx:100808004 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1495 16 35186630 35194087 Gso16g1495 16 35186630 35194087 ECH
Gso16g1495 16 35186630 35194087 Gso9g1114 9 32124372 32131823 GST