Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1416 ATGAATCCTTTTCATCCTCTGACTCACCAATTTCCCAAGTTACAAGCCTTGGTTTCTTCAATTCAAAAATCGTTGGTGTCCCCACAAAACCCAGTTCTTGTATTGGAGCTTCTGGGCAAAGTGTTAGACCAATACCCAGACATCAAAACCTTGAAAAATGTGCATTCCAAGGTTTTTAATCTTAGTTTCCACGAAAATCCATCTCTGGGGATCAAACTCATGCGGGCTTATGCTGCCCGTGGAGAACCCGGGTTGGCACGCAATGTGTTTGATGTAATTCCTGAGAGGAATGTTATTTTCTATAATGTCATGATCAGAAGCTATATGAATAACCATTTGTACGATGATGCATTGCTTGTTTTTAGGGACATGGTTAGTGGTGGTTTTAGCCCTGATCATTATACATACCCTTGTGTCTTGAAGGCTTGTTCTTGCTCTGACAATTTGAGGATTGGGTTGCAGCTTCATGGAGCTGTGTTTAAGGTTGGGCTTGATTTGAATTTGTTTGTTGGGAATGGTCTCATTGCTTTGTATGGGAAGTCTGGTTGCTTGCCTGAGGCACGGTGTGTTCTTGATGAAATGCAGAGCAAGGATGTTGTTTCATGGAACTCAATGGTTGCTGGGTATGCACAGAATATGCAGTTTGATGATGCATTGGATATTTGCCGAGAAATGGATGGTGTGAGGCAGAAGCCTGATGCTTGTACAATGGCTAGTCTCCTGCCAGCAGTAACTAACACTTCGTCGGAAAATGTTTTGTATGTTGAGGAGATGTTCATAAATTTGGAGAAGAAAAGTTTGGTCTCATGGAATGTCATGATAAGTGTATATATGAAAAACTCAATGCCTGGAAAATCTGTAGATCTATATTTACAAATGGGGAAATGTGAAGTGGAACCAGATGCAATCACTTGTGCTAGTGTTCTTCGAGCGTGTGGGGATCTTTCAGCTTTGTTGTTAGGAAGGAGGATTCATGAATATGTTGAGAGAAAGAAGCTATGTCCAAATATGCTTCTGGAGAATTCGCTGATAGATATGTATGCTAGGTGTGGATGTCTAGAAGATGCGAAAAGAGTGTTTGACAGAATGAAGTTTCGTGATGTTGCATCATGGACTTCATTGATATCTGCCTATGGTATGACTGGACAAGGCTATAATGCTGTGGCACTCTTCACGGAAATGCAAAATTCAGGTCAAAGTCCAGATTCTATTGCCTTTGTCGCAATTCTCTCAGCTTGTAGTCATTCAGGATTACTCAATGAAGGAAAGTTTTACTTTAAGCAGATGACAGATGATTACAAGATAACACCAATAATTGAACACTTTGCTTGCTTGGTGGATCTTTTAGGAAGATCAGGACGAGTGGATGAGGCCTATAATATCATCAAACAGATGCCAATGGAGCCTAATGAAAGAGTTTGGGGGGCACTGCTTAGTTCGTGTCGGGTGTACTCCAACATGGATATTGGGATTTTAGCTGCTGACAAACTACTTCAGTTGGCTCCTGAGGAATCAGGTTACTATGTGTTGTTATCTAATATTTATGCAAAGGCCGGTAGATGGACAGAAGTAACAGCTATTCGATCACTAATGAAGAGAAGAAGAATTCGGAAAATGCCCGGCATCAGCAATGTTGAGCTGAATAATCAGGTCCACACCTTTCTTGCAGGTGATACGTACCACCCACAGTCAAAAGAGATATATGAAGAGTTAAGTGTGCTGGTGGGGAAGATGAAAGAGTTAGGTTATGTGCCCGAGACTGATTCTGCCCTTCATGATGTGGAAGAGGAGGATAAAGAATGCCATCTAGCTGTTCATAGCGAGAAGTTAGCTATTGTCTTTGCTATTTTGAATACCCAAGAATCTCCAATCAGAATTACCAAAAACCTCCGTGTTTGTGGAGATTGTCATATTGCTGCCAAGCTTATCTCCAAGATAGTTCAACGTGAAATTGTCATCAGGGACACCAATCGATTCCATCATTTTAAGGATGGTATATGCTCTTGTGGTGATTATTGGTGA 2022 0.412 MNPFHPLTHQFPKLQALVSSIQKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKSGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFINLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMEPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQESPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1416 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 15 666 - -
Gso16g1416 673 Gene3D Tetratricopeptide repeat domain 421 613 IPR011990 GO:0005515
Gso16g1416 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Gso16g1416 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 666 - -
Gso16g1416 673 Pfam E motif 484 546 IPR046848 -
Gso16g1416 673 Pfam E+ motif 551 577 IPR046849 -
Gso16g1416 673 Gene3D Tetratricopeptide repeat domain 152 250 IPR011990 GO:0005515
Gso16g1416 673 Gene3D Tetratricopeptide repeat domain 318 420 IPR011990 GO:0005515
Gso16g1416 673 Gene3D Tetratricopeptide repeat domain 251 317 IPR011990 GO:0005515
Gso16g1416 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Gso16g1416 673 Pfam PPR repeat family 96 143 IPR002885 -
Gso16g1416 673 Pfam PPR repeat family 367 414 IPR002885 -
Gso16g1416 673 Pfam PPR repeat family 266 312 IPR002885 -
Gso16g1416 673 Pfam PPR repeat 172 198 IPR002885 -
Gso16g1416 673 Pfam PPR repeat 341 366 IPR002885 -
Gso16g1416 673 Pfam PPR repeat 200 225 IPR002885 -
Gso16g1416 673 Pfam PPR repeat 444 466 IPR002885 -
Gso16g1416 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Gso16g1416 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Gso16g1416 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 366 IPR002885 -
Gso16g1416 673 Gene3D Tetratricopeptide repeat domain 33 151 IPR011990 GO:0005515
Gso16g1416 673 TIGRFAM PPR: pentatricopeptide repeat domain 172 200 IPR002885 -
Gso16g1416 673 TIGRFAM PPR: pentatricopeptide repeat domain 268 302 IPR002885 -
Gso16g1416 673 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Gso16g1416 673 TIGRFAM PPR: pentatricopeptide repeat domain 370 402 IPR002885 -
Gso16g1416 673 TIGRFAM PPR: pentatricopeptide repeat domain 341 368 IPR002885 -
Gso16g1416 673 TIGRFAM PPR: pentatricopeptide repeat domain 101 132 IPR002885 -
Gso16g1416 673 Pfam DYW family of nucleic acid deaminases 582 673 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1416 Gso-Chr16 34149470 34152558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1416 63 673 Glycoside Hydrolase AT3G49170 37.690 7.76e-140 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1416 - - gmx:100787841 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1416 16 34149470 34152558 Gso16g1416 16 34149470 34152558 ECH