Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1322 ATGGCTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAAAATGATTTGCTTCAACTATTTCAGCCTTTTGGAGTAATAACAAAGCTTGTGATGTTGCGTGCCAAAAATCAGGCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATGTCCAGCCAAGCATAAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCACATCAGGAACTAACTACAATGGATCAAAATCAAGCACGAGAAGACGAGCCAAATCGAATTCTCTTAGTTACAGTTCATCACATGCTGTATCCTATAACAGCGGATGTGCTACATCAAGTGTTTTCTCCCCATGGATTTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCAGAAGTACTCTTCAGGGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAGGGACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAACCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAGGTGGGTTCTCTCAGATGGCCAATGCTGCGGCAATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATTAAACTTCTCCGAAATAAGCCAGATCATGCACTTATCCAAATGGGAGATGGTTTCCAAGCTGAATTGGCAGTACATTTTCTGAAGGGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCGAAGCATGCGAACATAACCCAAGGTGCTGATACACATGAGTATGTCAATTCAAATCTCAATCGATTCAATCGTAATGCTGCCAAGAACTATCGGTACTGCTGCTCACCGACAAAAATGGTCCACTTGTCCACCCTCCCGCAAGACATAACTGAAGAGGAGGTTGTAAGCCTTTTGGAGGAGCATGGAACCATTGTCAACAGCAAGGTCTTTGAGATGAATGGAAAAAAACAGGCACTTGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGCATGCAAGTCCACTTTCTGGATCAGTTGTTCGCATCTCCTTTTCCCAGTTGCAGAATATATGA 1320 0.4295 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTTMDQNQAREDEPNRILLVTVHHMLYPITADVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAAGMYSGARAGGFSQMANAAAIAAAFGGGLPPGITGTNERCTVLVANLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNYSKHANITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMVHLSTLPQDITEEEVVSLLEEHGTIVNSKVFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVVRISFSQLQNI* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1322 439 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Gso16g1322 439 Gene3D - 347 439 IPR012677 -
Gso16g1322 439 Gene3D - 1 97 IPR012677 -
Gso16g1322 439 MobiDBLite consensus disorder prediction 186 210 - -
Gso16g1322 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Gso16g1322 439 MobiDBLite consensus disorder prediction 186 205 - -
Gso16g1322 439 CDD RRM1_PTBPH3 6 80 IPR034795 -
Gso16g1322 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Gso16g1322 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 428 IPR000504 GO:0003723
Gso16g1322 439 SUPERFAMILY RNA-binding domain, RBD 250 435 IPR035979 GO:0003676
Gso16g1322 439 Pfam RRM-like domain 97 174 IPR021790 -
Gso16g1322 439 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 438 - -
Gso16g1322 439 SMART rrm1_1 7 76 IPR000504 GO:0003723
Gso16g1322 439 SMART rrm1_1 253 322 IPR000504 GO:0003723
Gso16g1322 439 SMART rrm1_1 101 170 IPR000504 GO:0003723
Gso16g1322 439 SMART rrm1_1 363 432 IPR000504 GO:0003723
Gso16g1322 439 CDD RRM3_PTBPH3 251 326 IPR034797 -
Gso16g1322 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 362 436 IPR000504 GO:0003723
Gso16g1322 439 Gene3D - 246 343 IPR012677 -
Gso16g1322 439 Gene3D - 98 201 IPR012677 -
Gso16g1322 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Gso16g1322 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 337 - -
Gso16g1322 439 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
Gso16g1322 439 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1322 Gso-Chr16 32633361 32642409 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1322 K14948 - gmx:100798234 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1322 16 32633361 32642409 Gso2g0661 2 6842036 6847578 GST
Gso16g1322 16 32633361 32642409 Gso20g1355 20 43668684 43676530 PCT
Gso16g1322 16 32633361 32642409 Gso10g1999 10 46975134 46983421 PCT
Gso20g1355 20 43668684 43676530 Gso16g1322 16 32633361 32642409 PCT
Gso10g1999 10 46975134 46983421 Gso16g1322 16 32633361 32642409 PCT