Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1237 ATGAGAGAAATAATAAGCATTCATATTGGGCAAGCTGGAATTCAGGTTGGTAATTCATGTTGGGAGCTATATTGCCTTGAACATGGCATTCAACCTGATGGAACAATGCCCAGTGATGGTTCAAATGATGCACATGATGCTTTCAACACCTTCTTCAGTGAAATTGGAACTGGCCAATATGTCCCAAGGGCATTATTTGTTGATCTGGAGCCTAGTGTAATTGATGAAATAAGATGTGGTCCTTACAAACAACTCTTTCATCCAGAGCAATTAATGTCTGGCAAGGAAGATGCTGCTAATAACTTTGCAAGGGGACATTACACAGTTGGAAAAGAAATTGAAGAGCTGTGCCTTGACCGTATCAGGAAGTTAGCCGACAATTGCACTGGCTTGCAAGGATTCTTGGTTTTCAATGCTGTTGGTGGTGGCACTGGTTCTGGCTTGGGGTCATTGCTTTTGGAACGTTTGTCTGTAGATTATGGGAAGAAGTCAAAGCTTGGCTTCATCATTTATCCTTCTCCTCAGGTATCTACTGCAGTTGTTGAACCATACAATACTGTTCTTTCCAATCACTCTCTTATTGAACACAGTGATGTAGTTGTGCTCTTGGACAATGAAGCAATATATGACATCTGCAGAAGATCACTAGAATTAGAAAGGCCAAATTACACCAACTTGAACCGCTTGATATCTCAAATCATCTCTTCTTTAACCACTTCCTTGAGATTTGATGGTGCAATCAATGTGGACATTTCTGAGTTCCAAACCAACCTTGTGCCATATCCGCGCATCCATTTCATGCTTTCTTCTTATGCCCCTGTGATATCTGCTGCGAAGGCCTACCATGAGCAGCTGTCAGTGCCTGAGATCACCAGAGCTGTGTTTGAGCCATCAAGCATGATGGTCAAGTGTGATCCAAGACATGGCAAGTACATGGCATGCTGCCTCATGTATCGTGGGGATGTTTTTCCAAAAGATGTAAACCTTGCTGTCTCAAATATCAAGACAAAGAGACAAGTTCAATTTGTTGACTGGTGCCCTACTGGTTTCAAGTGTGGTATCAACTACCAGGCTCCAACAGTGGTACCAGAAGGTGATCTTGCCAAGGTGCAAAGAGCAGTTTGTATGATAAGCAACAACACAGCTGTGGCAGAGGTTTTCTCTCGCATTGACCACAAATTTGACCTCATGTTTGCCAAAAGGGCCTTTGTGCACTGGTATGTGAGTGAAGGAATGGAAGAAGGTGAATTCTCAGAAGCCAGAGAGGATCTGGCAGCCCTTGAAAAGGACTATGAAGAGGTTGGGGATGAAGGTGTAGATGAAGATGATGTTTAA 1335 0.43 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDGSNDAHDAFNTFFSEIGTGQYVPRALFVDLEPSVIDEIRCGPYKQLFHPEQLMSGKEDAANNFARGHYTVGKEIEELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFIIYPSPQVSTAVVEPYNTVLSNHSLIEHSDVVVLLDNEAIYDICRRSLELERPNYTNLNRLISQIISSLTTSLRFDGAINVDISEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITRAVFEPSSMMVKCDPRHGKYMACCLMYRGDVFPKDVNLAVSNIKTKRQVQFVDWCPTGFKCGINYQAPTVVPEGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMFAKRAFVHWYVSEGMEEGEFSEAREDLAALEKDYEEVGDEGVDEDDV* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1237 444 Gene3D Tubulin/FtsZ, GTPase domain 1 267 IPR036525 -
Gso16g1237 444 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 243 IPR036525 -
Gso16g1237 444 Pfam Tubulin/FtsZ family, GTPase domain 3 212 IPR003008 GO:0005525
Gso16g1237 444 SUPERFAMILY Tubulin C-terminal domain-like 245 436 IPR008280 -
Gso16g1237 444 Pfam Tubulin C-terminal domain 262 391 IPR018316 -
Gso16g1237 444 Gene3D - 268 382 IPR037103 -
Gso16g1237 444 CDD alpha_tubulin 2 434 - -
Gso16g1237 444 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 44 57 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 87 100 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 119 127 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 147 159 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 160 171 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 213 225 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 273 288 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 320 341 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 346 359 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 359 378 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 384 400 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Alpha-tubulin signature 421 437 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Tubulin signature 52 71 IPR000217 GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Tubulin signature 94 105 IPR000217 GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Tubulin signature 107 131 IPR000217 GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Tubulin signature 133 151 IPR000217 GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Tubulin signature 152 173 IPR000217 GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Tubulin signature 177 190 IPR000217 GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Tubulin signature 191 211 IPR000217 GO:0005874|GO:0007017
Gso16g1237 444 PRINTS Tubulin signature 379 407 IPR000217 GO:0005874|GO:0007017
Gso16g1237 444 SMART Tubulin_4 48 245 IPR003008 GO:0005525
Gso16g1237 444 PANTHER TUBULIN 1 442 IPR000217 GO:0005874|GO:0007017
Gso16g1237 444 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 141 147 IPR017975 GO:0005525|GO:0005874|GO:0007017
Gso16g1237 444 Coils Coil 417 437 - -
Gso16g1237 444 SMART Tubulin_C_4 247 392 IPR018316 -
Gso16g1237 444 Gene3D Helix hairpin bin 383 435 IPR023123 -
Gso16g1237 444 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Gso16g1237 444 PANTHER TUBULIN ALPHA CHAIN 1 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1237 Gso-Chr16 31688577 31693818 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1237 K07374 - gmx:100780531 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0957 19 36713024 36716136 Gso16g1237 16 31688577 31693818 PCT
Gso16g0328 16 3709040 3712126 Gso16g1237 16 31688577 31693818 PCT
Gso16g1237 16 31688577 31693818 Gso19g0957 19 36713024 36716136 PCT
Gso16g1237 16 31688577 31693818 Gso16g0328 16 3709040 3712126 PCT