LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso16g1230	ATGAATGCACTAGCAGCCACCAACAGGAACTTTAGGCTGGCCTCTAGGCTCCTTGGATTGGATTCCAAGCTTGAGAAAAGTTTGCTGATTCCATTTAGAGAAATCAAGGTTGAATGTACCATCCCCAAAGATGATGGCAGCTTGGCCACTTTTGTTGGATTCAGGATTCAACATGATAATGCTAGAGGCCCCATGAAAGGAGGGATCAGATACCATCCTGAGGTTGAACCAGATGAAGTGAATGCTTTGGCACAACTAATGACATGGAAGACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGAATAGGGTGTGACCCTGCAGATTTAACTGTGTCAGAGTTAGAAAGACTCACTAGAGTTTTTACCCAGAAAATTCATGATCTGATTGGAGTTCAGACAGATGTGCCTGCACCTGATATGGGAACAGGACCACAGACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCTGCAGTAGTGACTGGGAAACCTGTAGAACTCGGTGGATCTCTAGGCAGAGATGCAGCTACTGGACGAGGAGTCCTCTTTGCAACGGAGGCTTTGCTTAAGGAGCATGGGATGAGTGTATCCGGACAGCGGTTTATCATACAGGGATTTGGAAATGTGGGGTCTTGGGCTGCCCAATTGATCAGTGAGAAAGGTGGAAAAGTTGTTGCAGTGAGTGACATAACTGGGGCCATAAAGAATACCAATGGCCTTGACATACCAAGCTTGCTCAAACATTCTAGAGAACACAGGGGAGTCAAAGGATTCCATGGTGGTGATGCAATTGACCCCAACTCAATATTGGTTGAAGACTGTGATGTTCTTGTCCCAGCAGCTCTTGGTGGAGTCATCAATAGGGAAAACGCAAATGAGATTAAGGCCAAATTTATTGTTGAAGCAGCCAATCACCCAACTGACCCGGAGGCTGATGAGATTCTGAAAAAGAAAGGGGTTGTGATCCTCCCAGATATATTTGCAAATTCAGGAGGAGTCACAGTTAGCTACTTTGAGTGGGTGCAGAACATTCAAGGGTTCATGTGGGATGAGGAGAAGGTGAACAACGAGCTAAAGACATACATGACTAAAGGGTTCAAAGATGTGAAGGAGATGTGCAAAACCCATAATTGTGATCTTCGTATGGGAGCATTCACCCTTGCAGTTAACCGTGTGGCAAGGGCCACTGTACTTAGGGGTTGGGAAGCTTGA	1236	0.4563	MNALAATNRNFRLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPADLTVSELERLTRVFTQKIHDLIGVQTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPVELGGSLGRDAATGRGVLFATEALLKEHGMSVSGQRFIIQGFGNVGSWAAQLISEKGGKVVAVSDITGAIKNTNGLDIPSLLKHSREHRGVKGFHGGDAIDPNSILVEDCDVLVPAALGGVINRENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHNCDLRMGAFTLAVNRVARATVLRGWEA*	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso16g1230	411	PIRSF	Glu_DH	1	411	IPR014362	GO:0016639
	Gso16g1230	411	Pfam	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	176	408	IPR006096	GO:0006520\|GO:0016491
	Gso16g1230	411	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	176	409	IPR036291	-
	Gso16g1230	411	CDD	NAD_bind_1_Glu_DH	176	402	IPR033922	GO:0016639
	Gso16g1230	411	PANTHER	BNAA05G37230D PROTEIN	1	405	-	-
	Gso16g1230	411	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	88	102	IPR006095	GO:0006520\|GO:0016491
	Gso16g1230	411	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	167	189	IPR006095	GO:0006520\|GO:0016491
	Gso16g1230	411	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	209	229	IPR006095	GO:0006520\|GO:0016491
	Gso16g1230	411	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	336	347	IPR006095	GO:0006520\|GO:0016491
	Gso16g1230	411	PANTHER	GLUTAMATE DEHYDROGENASE	1	405	-	-
	Gso16g1230	411	Gene3D	Leucine Dehydrogenase, chain A, domain 1	33	175	-	-
	Gso16g1230	411	Gene3D	-	176	410	-	-
	Gso16g1230	411	SUPERFAMILY	Aminoacid dehydrogenase-like, N-terminal domain	6	178	IPR046346	-
	Gso16g1230	411	SMART	ELFV_dehydrog_3	178	408	IPR006096	GO:0006520\|GO:0016491
	Gso16g1230	411	Pfam	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	33	159	IPR006097	GO:0006520\|GO:0016491
	Gso16g1230	411	ProSitePatterns	Glu / Leu / Phe / Val dehydrogenases active site.	96	109	IPR033524	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso16g1230	Gso-Chr16	31632117	31637050	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso16g1230	1	296	EF-hand Containing Proteins	AT5G07440	77.703	8.39e-178	496

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso16g1230	K00261		-	gmx:100777869	830.861

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g0944	19	36517557	36521661	Gso16g1230	16	31632117	31637050	PCT
	Gso16g0336	16	3809990	3817822	Gso16g1230	16	31632117	31637050	PCT
	Gso16g1230	16	31632117	31637050	Gso19g0944	19	36517557	36521661	PCT
	Gso16g1230	16	31632117	31637050	Gso16g0336	16	3809990	3817822	PCT