Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0487 ATGGACAAGCTAAGCCAGTATAAACGTGTGTTCAACCAATTTGATGAGAATGGAGACAGCAAGATATCGCCGTCAGAGCTCCGGCAATGCGTGGAGGCCATTGGCGGGGAGTTGTCAGAGAAGGACGCGGAGGTGGCAGTGACATTGCTCGACAGGGACGGCGATGGACTGGTGGGGTTTGAAGATTTTGTGAGGTTTTTGGAGGAAGGGAAAGAGGAAGAGAAAGAGGATGACTTGAAGGAGGCTTTTAAGAGGTATGAGATGGATGGGAGTGGTTGCATCACACCCAGGAGTCTTAAGAGGATGCTTAGTAGGTTAGGTGAATCTAGAAGCTTAGATGAGTGTAAAGTTATGATTGCTAGATTTGATCTTGATGGAGATGGGGTGCTCACTTTCGATGAATTTAAGGTCATGATGTTGTAA 423 0.4681 MDKLSQYKRVFNQFDENGDSKISPSELRQCVEAIGGELSEKDAEVAVTLLDRDGDGLVGFEDFVRFLEEGKEEEKEDDLKEAFKRYEMDGSGCITPRSLKRMLSRLGESRSLDECKVMIARFDLDGDGVLTFDEFKVMML* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0487 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Gso16g0487 140 CDD EFh 6 67 IPR002048 GO:0005509
Gso16g0487 140 Pfam EF-hand domain pair 91 139 IPR002048 GO:0005509
Gso16g0487 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Gso16g0487 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Gso16g0487 140 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Gso16g0487 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Gso16g0487 140 Gene3D - 1 68 - -
Gso16g0487 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Gso16g0487 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 140 - -
Gso16g0487 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Gso16g0487 140 CDD EFh 82 139 IPR002048 GO:0005509
Gso16g0487 140 Gene3D - 69 140 - -
Gso16g0487 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 140 - -
Gso16g0487 140 SUPERFAMILY EF-hand 4 140 IPR011992 -
Gso16g0487 140 SMART efh_1 114 140 IPR002048 GO:0005509
Gso16g0487 140 SMART efh_1 42 70 IPR002048 GO:0005509
Gso16g0487 140 SMART efh_1 78 106 IPR002048 GO:0005509
Gso16g0487 140 SMART efh_1 6 34 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0487 Gso-Chr16 5744639 5745467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0487 2 139 EF-hand Containing Proteins AT1G76650 50.725 9.44e-43 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0487 K13448 - gmx:100783575 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0769 19 31363016 31363664 Gso16g0487 16 5744639 5745467 GST