Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0482 ATGCTTCCTCTGGGAAATAGACACTTTTCCCATAAAGAACAATGTGAAGAAGACCTCACCAGGTATGTGGACATTCTCACTGCGAAACTTGGCAAAGGAAGCAGTGAGGAAGAAACCCTTCACACCCTTTTCAATGATCAAGCTTGTGATTTCATACCCCTCTCCCGAGACCTTGTTCACCGGTTGCTCTGGCGATACAAGGATGATTGGAAGTCTGCATTGGGGGTATTCAGATGGGCCAGTTCGCGACCGAGCTTTAGACATTCGTCGGAGTCGTATGATATGATGGTAGACATATTGGGTAGGATGAAGGTTATGGAAAAGTTGAGGGATTTGTTAGAAGAAATGCGCGAGGGTGGTCTTGTCAATATGAATACTGTGGCGAAGGCCATGAGACGGTTTGTTGGAGCAGGGCAGTGGGTAGATGCTGTGAGGATATTTGATGACTTGCAAGCTCTTGGATTGGAGAAGAACACGGAATCCATGAACTTGTTGCTCGATACCCTGTGCAAAGAGAAATTCGTGCAGCAAGCTCGTGAAATTTTCTTGGAACTGAAGCAGCACATTGCTCCCAATGCTCACACGTTTAACATCTTCATTCATGGATGGTGCAAAATCTGCCGTGTGGACGAGGCACATTGGACGATTCAAGAGATGAAAGGATATGGTTTTCACCCCTGTGTTATAAGTTATTCCACCCTCATTCAGTGTTACTGTCAAGAAGGGAATTTCAGCAGGGTGTATGAGCTTCTTGATGAAATGCAGGCTCAAGGGTGCTCTGCAAATGTGATAACTTATACTTCTATCATGTGTGCACTAGGAAAGGCTAAAAAGTTCGAGGAAGCTTTGAAAGTACCTGAGAGAATGAGGTCTTCTGGATGTAGGCCTGATACTCTTTTCTTCAATTCGTTGATACATACATTGGGGAGAGCAGGTAGATTAGATGATGCTGCCGATGTATTCAAGGTGGAAATGCCTAAGGCTGGTGTTTCCCCAAATACATCCACCTATAATTCAATGATTTCTATGTTTTGTTATCATGCACAAGAAAAGAGAGCTTTAGAAATATTGAAGGAGATGGAAAATTCAGGTGGTTGTAAGCCTGATGCTCAGACTTACCACCCATTGATCAAGTCTTGCTTTAGAAGTGGAAAAATAGATGGTGTGTTGAGTGAGATATTAAATGACATGATTAATAAACAGCATCTCAGTCTTGATCTTTCAACCTATACACTGCTAATTCACGGGCTTTGTAGAGAAGATAGATGCAATTGGGCATTCTCTCTATTTGAGGAGATGATTGATCAAGATATAATACCTAGATACAGAACTTGCCGTTTGCTATTGGATGAAGTCAAGCAGAAAAATATGTACCAAGCTGCTGAGAAAATTGAGGATCTTATGAAAAAATTGTAA 1416 0.4209 MLPLGNRHFSHKEQCEEDLTRYVDILTAKLGKGSSEEETLHTLFNDQACDFIPLSRDLVHRLLWRYKDDWKSALGVFRWASSRPSFRHSSESYDMMVDILGRMKVMEKLRDLLEEMREGGLVNMNTVAKAMRRFVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLDTLCKEKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLLDEVKQKNMYQAAEKIEDLMKKL* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0482 471 PANTHER OS02G0601600 PROTEIN 6 471 - -
Gso16g0482 471 TIGRFAM PPR: pentatricopeptide repeat domain 264 298 IPR002885 -
Gso16g0482 471 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Gso16g0482 471 TIGRFAM PPR: pentatricopeptide repeat domain 336 370 IPR002885 -
Gso16g0482 471 TIGRFAM PPR: pentatricopeptide repeat domain 229 262 IPR002885 -
Gso16g0482 471 TIGRFAM PPR: pentatricopeptide repeat domain 92 122 IPR002885 -
Gso16g0482 471 TIGRFAM PPR: pentatricopeptide repeat domain 409 440 IPR002885 -
Gso16g0482 471 TIGRFAM PPR: pentatricopeptide repeat domain 194 226 IPR002885 -
Gso16g0482 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Gso16g0482 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Gso16g0482 471 Gene3D Tetratricopeptide repeat domain 325 471 IPR011990 GO:0005515
Gso16g0482 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Gso16g0482 471 Pfam PPR repeat 403 433 IPR002885 -
Gso16g0482 471 Pfam PPR repeat 293 322 IPR002885 -
Gso16g0482 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 332 IPR002885 -
Gso16g0482 471 Pfam PPR repeat family 332 381 IPR002885 -
Gso16g0482 471 Pfam PPR repeat family 157 205 IPR002885 -
Gso16g0482 471 Pfam PPR repeat family 226 274 IPR002885 -
Gso16g0482 471 Gene3D Tetratricopeptide repeat domain 30 186 IPR011990 GO:0005515
Gso16g0482 471 Gene3D Tetratricopeptide repeat domain 187 255 IPR011990 GO:0005515
Gso16g0482 471 Gene3D Tetratricopeptide repeat domain 256 324 IPR011990 GO:0005515
Gso16g0482 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Gso16g0482 471 Pfam PPR repeat 92 120 IPR002885 -
Gso16g0482 471 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 6 471 - -
Gso16g0482 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Gso16g0482 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0482 Gso-Chr16 5677890 5680698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0482 165 470 Miscellaneous Gene Families AT4G11690 28.710 7.80e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0482 - - gmx:100819027 963.37