Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0479 ATGGCTCTTCTAGGCTTAATGAGTTTTGCTGCCTTGACCCTTTTCTTGGTCCTAACAACTGTGCCTCGTCAAGCACACGCTTCAAGCCGTGGCAACTTAGGCAGAAACATCAACCCTTCAGTGTATGGCATATGTGCCTCTTCTGTCATTGTGCATGGATACAAGTGTCAAGAACACGAGGTTACAACTGATGATGGTTACATTCTGAGCCTGCAAAGGATCCCAGAAGGTCGAGGTAAAAGCAGTGGGAGTGGGACAAGGAAGCAACCAGTGGTTATACAACATGGAGTTCTTGTAGATGGTATGACATGGCTTCTAAACCCACCAGAGCAAGATCTGCCGTTGATTTTAGCTGATAATGGATTTGACGTGTGGATTGCAAACACAAGAGGAACCAGATATAGTCGCCGACACATCTCATTGGACCCCTCTAGCCAGGCCTATTGGAATTGGTCTTGGGATGAACTTGTCTCCTATGATTTCCCTGCGGTGTTTAATTATGTGTTCAGCCAAACGGGGCAGAAGATCAATTACGTTGGCCATTCATTGGGAACTTTGGTAGCTTTGGCATCCTTCTCGGAAGGAAAATTGGTTAACCAGCTGAAATCAGCAGCCTTGTTGAGCCCTATAGCCTATTTAAGCCACATGAATACAGCACTTGGTGTTGTTGCAGCCAAGTCCTTTGTTGGTGAGATCACTACCCTCTTCGGTCTAGCAGAATTTAATCCAAAAGGGTTAGCTGTTGATGCCTTTCTCAAGTCTCTCTGTGCTCACCCTGGGATAGACTGCTATGACTTGTTGACTGCACTAACTGGTAAAAATTGCTGCCTCAATTCTTCAACTGTTGATCTATTCTTGATGAATGAGCCTCAGTCAACATCAACAAAGAACATGGTGCACTTGGCTCAGACTGTTAGACTTGGGGCGTTGACAAAATTCAATTATGTGAGACCAGACTATAACATTATGCACTATGGAGAAATATTTCCTCCAATCTATAACCTTTCCAACATCCCCCACGATCTCCCTCTCTTCATTAGCTATGGTGGAAGAGATGCACTTTCAGATGTCCGTGATGTTGAGAATTTGCTTGATAAACTCAAGTTCCATGATGAGAACAAGCGCAGCGTTCAGTTCATCCAGGAATATGCTCATGCTGACTACATTATGGGGTTCAATGCCAAGGACTTGGTGTATAATGCTGTTCTTTCATTTTTCAATCATCAAGTTTAA 1233 0.4396 MALLGLMSFAALTLFLVLTTVPRQAHASSRGNLGRNINPSVYGICASSVIVHGYKCQEHEVTTDDGYILSLQRIPEGRGKSSGSGTRKQPVVIQHGVLVDGMTWLLNPPEQDLPLILADNGFDVWIANTRGTRYSRRHISLDPSSQAYWNWSWDELVSYDFPAVFNYVFSQTGQKINYVGHSLGTLVALASFSEGKLVNQLKSAALLSPIAYLSHMNTALGVVAAKSFVGEITTLFGLAEFNPKGLAVDAFLKSLCAHPGIDCYDLLTALTGKNCCLNSSTVDLFLMNEPQSTSTKNMVHLAQTVRLGALTKFNYVRPDYNIMHYGEIFPPIYNLSNIPHDLPLFISYGGRDALSDVRDVENLLDKLKFHDENKRSVQFIQEYAHADYIMGFNAKDLVYNAVLSFFNHQV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0479 410 Pfam Partial alpha/beta-hydrolase lipase region 51 107 IPR006693 GO:0006629
Gso16g0479 410 PANTHER LYSOSOMAL ACID LIPASE-RELATED 11 409 - -
Gso16g0479 410 PIRSF Steryl_ester_lip 6 410 IPR025483 GO:0016788
Gso16g0479 410 SUPERFAMILY alpha/beta-Hydrolases 52 407 IPR029058 -
Gso16g0479 410 Gene3D alpha/beta hydrolase 34 408 IPR029058 -
Gso16g0479 410 PANTHER TRIACYLGLYCEROL LIPASE 2 11 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0479 Gso-Chr16 5641278 5647805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0479 1 410 Acyl Lipid Metabolism Gene Families AT2G15230 36.562 5.25e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0479 K01052 - gmx:100779460 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0479 16 5641278 5647805 Gso13g0340 13 14813972 14815094 PCT