Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0414 ATGATGAATTATTTCCCGGACGAGGTAATAGAGCACATATTTGACTATGTGGTGTCACATAGTGACCGAAATGCTTTGTCTTTGGTGTGTAAAAGTTGGTACAGGATAGAGAGGTGTACGAGGCAAAGGGTGTTCATAGGGAACTGTTACTCCATCACTCCGGAGAGGTTGATCCAGAGGTTTCCTGGTCTAAAGTCTTTGACTTTGAAGGGAAAGCCTCATTTTGCTGACTTCAGTTTGGTGCCTTATGATTGGGGTGGCTTTGTGCATCCATGGATTGAGGCACTGGCCAAGAACAAGGTTGGCTTGGAGGAGCTTAGGCTCAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTCTCTCGGTCTTTCACACACTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTCTCCACTGATGGCCTTGCTGCTTTAGCTGCAAATTGCAGGTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAGGTTGAAGATCACAAAGGCCAGTGGCTAAGTTGCTTTCCTGACAACTGCACATCACTTGTTTCTCTTAATTTTGCTTGCCTTAAAGGAGAGGTTAGTTTGGGAGCACTAGAGAGACTTGTGGCCAGATCTCCTTACCTGAAGAGTTTAAAGCTGAATCGTTCAGTGCCCTTTGATGCACTGCAAAGGATAATGATGCGAGCACCTCAATTATCGGATTTGGGTATTGGATCATTTGTCCATGATCCAGAATCAGAGGCCTACATAAAGCTTAAGAATACCATTCTCAAGCGCAAGTCCATAACCAGTTTGTCAGGATTTTTGGAAGTTGCTCCTCATTGTCTTGCAGCAATATATCCTATTTGCCCGAACTTAACATCCTTGAACTTGAGCTATGCAGCAGGCATTCAGGGTAGTGATCTGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTGATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGTAAAGACTTGCAAGAATTGAGGGTGTTTCCATCTGTTCCCTTTGGAAATCCAGCAGCCGTCACAGAAAAAGGGCTGGTTGCAATATCAATGGGTTGCCCTAAGCTTCACTCATTGCTCTATTTCTGCCACCAGATGACAAATGCTGCACTCATAACGGTGGCTAAGAACTGCCCGAATTTTATCCGATTCAGGCTGTGTATCCTTGATGCAACAAAACCCGACCCTGATACAATGCAGCCACTGGACGAAGGTTTTGGCGCAATTGTTCAGTCTTGCAGGCGACTCAGGCGCCTATCCCTCTCGGGGCAATTGACCGACCAGGTTTTCCTTTACATAGGAATGTACGCTGAGAAGCTTGAAATGCTGTCCATTGCATTTGCTGGGGAGAGCGACAAGGGAATGCTCTATGTGTTGAATGGATGCAAGAAGCTTAGGAAGCTTGAGATTAGAGACTGCCCTTTTGGCAATGTGGCACTTCTGACGGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGTGAAGTGACCGTCGGAGCCTGCAAGTTGCTAGCAAAGAAGATGCCGAGGTTGAATGTGGAGATCTTCAATGAAAACGAGCAAGAAGATTGTAGTCTGGAAGATGGGCAGAAGGTAGAGAAGATGTATTTGTATCGTACATTGGCTGGGAAAAGGAAAGATGCACCTGAATATGTATGGACTCTATAG 1719 0.4549 MMNYFPDEVIEHIFDYVVSHSDRNALSLVCKSWYRIERCTRQRVFIGNCYSITPERLIQRFPGLKSLTLKGKPHFADFSLVPYDWGGFVHPWIEALAKNKVGLEELRLKRMVVSDESLELLSRSFTHFKSLVLVSCEGFSTDGLAALAANCRFLRELDLQENEVEDHKGQWLSCFPDNCTSLVSLNFACLKGEVSLGALERLVARSPYLKSLKLNRSVPFDALQRIMMRAPQLSDLGIGSFVHDPESEAYIKLKNTILKRKSITSLSGFLEVAPHCLAAIYPICPNLTSLNLSYAAGIQGSDLIKLIRHCVKLQRLLIMDCIGDKGLDVVATSCKDLQELRVFPSVPFGNPAAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCRRLRRLSLSGQLTDQVFLYIGMYAEKLEMLSIAFAGESDKGMLYVLNGCKKLRKLEIRDCPFGNVALLTDVGKYETMRSLWMSSCEVTVGACKLLAKKMPRLNVEIFNENEQEDCSLEDGQKVEKMYLYRTLAGKRKDAPEYVWTL* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0414 572 PANTHER PROTEIN AUXIN SIGNALING F-BOX 3 3 569 - -
Gso16g0414 572 SMART LRR_CC_2 125 150 IPR006553 -
Gso16g0414 572 SMART LRR_CC_2 100 124 IPR006553 -
Gso16g0414 572 SMART LRR_CC_2 284 309 IPR006553 -
Gso16g0414 572 SMART LRR_CC_2 426 449 IPR006553 -
Gso16g0414 572 SMART LRR_CC_2 366 390 IPR006553 -
Gso16g0414 572 SMART LRR_CC_2 475 500 IPR006553 -
Gso16g0414 572 Gene3D Ribonuclease Inhibitor 42 572 IPR032675 -
Gso16g0414 572 Pfam F-box 3 42 IPR041567 -
Gso16g0414 572 Gene3D - 1 41 - -
Gso16g0414 572 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 3 569 - -
Gso16g0414 572 Pfam Transport inhibitor response 1 protein domain 62 108 IPR041101 -
Gso16g0414 572 SUPERFAMILY RNI-like 16 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0414 Gso-Chr16 4797863 4801226 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0414 - - gmx:100788209 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0864 19 34742845 34746173 Gso16g0414 16 4797863 4801226 GST