Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0379 ATGGCTTCTTCTTCTTCTTCTCTTCTCCCAAGGTCACACATTCCCACACCCCTCATCTCCAAAATCAGCTCCTCCCCCAGAACATGGAGCCTCTTCATTCTCACATACCCTTCACACCCCAAAAACAACAACAACAACAACAACAACAACAAAAGACTATTCCTTTCCCCCACCAATGCAGTGTACACTCAAAGCCCCTACACCCCTTCCACACCCTCCAAGACCGAACTCCACAACGACCCCATCACCGTCCTCAACGAGAGGATTCGGCGCGACTTGAGCAAGAAGGAGGCTTTCAGAACGGTGATGGACTCGGAGGAGGCGGGGAAGTACATGAAGATGGTGAAGGTGCAGCAGCAGAGAGGGTTGCAGAAGTTGAAGGGCGACAGAGAGAGTAAAGATGGGGTCTTTAGCTACAAAGTCGACCCTTACACGCTCCGTTCTGGGGACTATGTTGTGCACAGGAAAGTCGGAGTTGGTAGGTTCGTTGGGATGAGGTTTGATGTTGCCAAGAATTCTTCACAGCCCACTGAGTATGTCTTCATTGAGTATGCTGATGGCATGGCAAAGCTACCTGTAAACAAGGCTGCTAAAATGCTCTATAGATATAGTTTGCCAAACGAAACCAAAAAGCCAAAGGCATTGAGCAAGTTGAGTGATACTAGTGCATGGGAGAAAAGAAAGGTTAAAGGGAAGGTTGCAATACAGAAAATGGTTGTGGACTTAATGGAACTCTATCTACATAGGCTCAAACAAAGAAGGCCTCTCTATCCAAAGAGTCCTGCCATGGCCGAATTCGCAGCCCTGTTTCCTTATGAACCTACGCCGGATCAGAAACGGGCATTTATTGATGTTGAGAGGGATTTGACAGAGAGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTACGTGCTATCTCCTGTGTTGTCTCAGCTAAAAAACAAGCAATGGTTCTGGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATATCCTGATATTAAGGTTGGACTACTAAGCAGGTTTCAGACCAAAGCAGAGAAAGAAGAGAACTTGGACAAGATTAAGAATGGTAGCTTGGATATTATCGTTGGGACTCATTCACTCCTAGGAGACCGTGTTACATATAACAACCTTGGTCTGCTTGTGGTTGATGAGGAGCAGAGGTTTGGTGTCAAACAGAAGGAGAAGATTGCTTCTTTTAAAACTTCTGTGGATGTACTTACTTTATCTGCAACCCCTATACCACGAACTCTTTATTTAGCATTAACAGGGTTTCGTGATGCTAGTTTAATGTCAACTCCACCCCCAGAAAGAGTTCCTATCAAGACTCACCTTTCTTCATTCAGTGAGGACAAAGTAGTATCAGCCATCAAGTATGAGCTGGATCGTGGTGGTCAAGTTTTTTATGTTCTGCCAAGAATTAAAGGACTTGATGAAGTAATGACATTTCTTGCAGAGTCATTTCCAAATGTGGAAATAGCCATTGCCCATGGGAAGCTATACTCAAAACAATTAGAGGATACCATGGAGAAGTTTGCTCTGGGTGAAATAAAAATCCTTATCTGCACAAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCAAATACCATAATCATTCAGGATGTTCAACAATTTGGCCTCGCACAGTTGTACCAGTTGCGTGGAAGGGTTGGGCGAGCAGATAAGGAAGCACATGCATACTTATTTTACCCTGACAAAAGCCTGCTTTCTGATCAAGCATTGGAGAGGCTTGCTGCTATTGAAGAATGCCGCGAACTTGGTCAAGGCTTCCAACTAGCGGAGAAAGACATGGGTATAAGAGGTTTTGGTGCAATTTTTGGTGAACAACAATCAGGAGATGTCGGAAATGTTGGTATTGATCTTTTTTTTGAGATGCTCTTCGAGAGCTTGTCCAAGGTTGAAGATCACCGTGTTGTTTCAGTTCCTTATCACTCAGTGCAGGTTGACATAAACATCAATCCTCATCTCCCTTCTGACTACATTAATTATCTGGAGAACCCTTTGAAAATAATAAATGACGCTGAGAGAGTTGCTGAGAAAGACATCTGGAGTCTGATGCAATTTACAGAGAATTTGCGCCGCCAATATGGAAAAGAGCCTCGCTCCATGGAGATTTTACTGAAGAAGCTTTACTTGAGGAGAATGGCTGCTGATTTAGGGATAACCAGTATTTACTCTTCAGGGAAGATGATCTATATGAAAACAAACATGAGTAAAAAGGTATTCAAGATGATGACAGAGTCCATGGCATCAGATTTACATAGAAATTCATTGGTTCTTGAGGGGGACCAAATTAAGGCTGAACTACTACTAGAGCTACCAAAAGAACAACTTCTTAATTGGATCTTTCAATGCTTGGCTGAACTTCATGCTTCACTACCCTCCTTCATAAAGTACTAG 2484 0.4287 MASSSSSLLPRSHIPTPLISKISSSPRTWSLFILTYPSHPKNNNNNNNNNKRLFLSPTNAVYTQSPYTPSTPSKTELHNDPITVLNERIRRDLSKKEAFRTVMDSEEAGKYMKMVKVQQQRGLQKLKGDRESKDGVFSYKVDPYTLRSGDYVVHRKVGVGRFVGMRFDVAKNSSQPTEYVFIEYADGMAKLPVNKAAKMLYRYSLPNETKKPKALSKLSDTSAWEKRKVKGKVAIQKMVVDLMELYLHRLKQRRPLYPKSPAMAEFAALFPYEPTPDQKRAFIDVERDLTERETPMDRLICGDVGFGKTEVALRAISCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTKAEKEENLDKIKNGSLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVPIKTHLSSFSEDKVVSAIKYELDRGGQVFYVLPRIKGLDEVMTFLAESFPNVEIAIAHGKLYSKQLEDTMEKFALGEIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGIDLFFEMLFESLSKVEDHRVVSVPYHSVQVDININPHLPSDYINYLENPLKIINDAERVAEKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYLRRMAADLGITSIYSSGKMIYMKTNMSKKVFKMMTESMASDLHRNSLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0379 827 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 289 451 IPR014001 -
Gso16g0379 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 596 IPR027417 -
Gso16g0379 827 Pfam CarD-like/TRCF domain 146 246 IPR003711 -
Gso16g0379 827 SUPERFAMILY TRCF domain-like 670 817 IPR037235 -
Gso16g0379 827 SMART ultradead3 270 462 IPR014001 -
Gso16g0379 827 SMART helicmild6 498 582 IPR001650 -
Gso16g0379 827 Gene3D - 149 211 - -
Gso16g0379 827 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 8 798 - -
Gso16g0379 827 CDD DEXHc_TRCF 260 453 - -
Gso16g0379 827 SUPERFAMILY CarD-like 141 208 IPR036101 -
Gso16g0379 827 Pfam TRCF domain 679 767 IPR005118 GO:0006281
Gso16g0379 827 SMART CarD_TRCF_2 145 247 IPR003711 -
Gso16g0379 827 Gene3D - 146 660 IPR027417 -
Gso16g0379 827 Pfam DEAD/DEAH box helicase 296 434 IPR011545 GO:0003676|GO:0005524
Gso16g0379 827 Pfam Helicase conserved C-terminal domain 477 581 IPR001650 -
Gso16g0379 827 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 626 IPR001650 -
Gso16g0379 827 Gene3D - 212 453 IPR027417 -
Gso16g0379 827 Gene3D - 673 820 IPR037235 -
Gso16g0379 827 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 8 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0379 Gso-Chr16 4296051 4308376 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0379 - - gmx:100791900 1601.26