Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0372 ATGAAAATGGGTTCTTCTTTGTGGACTTTGTGTCTAATTTTGGCTTCACTAGCCTCTTCTGCATTCTGTGCCTTTCCACGGAGGCCAGTGGATGTTCCATTCGGCAGAAACTACGTTCCCACTTGGGCTTTTGATCACATCAAATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGAACATAAAGATGGTTCCTGGCGATTCAGCTGGCACAGTCACTGCTTTTTATTTATCTTCTCAAAATGCGGAGCACGATGAGATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTGTTCACCGGAGGCAAGGGTGACAGAGAGCAAAGAATCTTTCTCTGGTTTGATCCCACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTTGGGAGTGAAGTTCCCCTTTGACCAACCCATGAAGGTGTACAACAGCTTGTGGAATGCTGATGACTGGGCCACAAGGGGTGGTTTGGAGAAAACAGATTGGTCCAAAGCACCCTTCATAGCAGAATACAAAGGGTTCCACGTTGATGGGTGTGAAGCTTCAGTGAATGCAAAGTTCTGTGCTACACAAGGCAAGAGGTGGTGGGATCAAGCACAGTATCATGATCTTGATGCTTCTCAATGGAGATGGCTCAGGTGGGTGCGCAGGAAATACACCATCTACAACTACTGCACTGACAGAAGCCGCTACCCTCAGCTTCCACCTGAATGTAGAAGAAACCGTGACATTTAA 888 0.4516 MKMGSSLWTLCLILASLASSAFCAFPRRPVDVPFGRNYVPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIFLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKGLGVKFPFDQPMKVYNSLWNADDWATRGGLEKTDWSKAPFIAEYKGFHVDGCEASVNAKFCATQGKRWWDQAQYHDLDASQWRWLRWVRRKYTIYNYCTDRSRYPQLPPECRRNRDI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0372 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 108 118 IPR008263 GO:0004553|GO:0005975
Gso16g0372 295 CDD GH16_XET 29 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso16g0372 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 293 IPR013320 -
Gso16g0372 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 222 IPR000757 GO:0004553|GO:0005975
Gso16g0372 295 PIRSF EndGlu_transf 1 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso16g0372 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4 293 - -
Gso16g0372 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 289 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gso16g0372 295 Gene3D - 20 295 - -
Gso16g0372 295 Pfam Glycosyl hydrolases family 16 35 215 IPR000757 GO:0004553|GO:0005975
Gso16g0372 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 293 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0372 Gso-Chr16 4225016 4226819 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0372 3 295 Glycoside Hydrolase AT5G13870 78.498 0.0 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0372 K08235 - gmx:100779122 625.55