Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0368 ATGAAGGTGGCATGTTGTAGCCCAGACATTATTAATGCTCCCTACTTGGGAACCCCAAGAACAAGGTTTGGTTCTGAGGAAGCCCTTGTCTTGCTTCAAAAATGTAGCAACTTCAAACAACTCAAGCAAGTCCATGGCAAAATAATCCGTTTTGGTCTTACCTATGACCAATTGCTTATGAGGAAACTAATTCAGCTCTCTTCCTCTTATGGCAAAATGAAATATGCCACTTTGGTATTTGATCAACTCAATGCCCCAGATGTCTTCACTTGGAATGTCATGATTAGAGCTTTTACCATTGGTGGTTCTCCTAAAATGGCCCTTCTTTTGTTCAAGGCCATGCTATGCCAGGGCTTTGCACCTGACAAGTTTACATACCCTTTTGTGATCAATGCTTGCATGGCCTCTAGTGCCCTTGATCTTGGAATAGTAGCCCATGCTTTGGCCATCAAAATGGGATTTTGGGGTGACCTGTATGTGCAAAACACCATGATGAATCTCTACTTCAAGTGTGAGAATGTGGATGATGGACGGAAGGTGTTTGATAAAATGCGTGTGCGCAATGTGTTCGCGTGGACCACCGTGATTTCTGGGCTTGTTGCCTGTGGGAAATTGGACACTGCCAGGGAGCTATTTGAGCAGATGCCTTCCAAGAATGTTGTTTCATGGACTGCAATGATTGATGGGTATGTGAAACACAAGCAGCCCATTGAAGCCTTCAATCTGTTTGAAAGAATGCAGCAGGTTGATAATGTGAGGCCAAATGAGTACACTTTGGTGAGCCTGGTCAGAGCATGTACTGAGATGGGTAGCCTCAAGTTGGGTAGAAGGGTTCATGATTTTGCTCTCAAGAATGGTTTTGAGCTTGAGCCATTCTTGGGTACCGCGCTTATAGACATGTACAGCAAGTGTGGCTATTTAGATGATGCGAGGACAGTGTTTGATATGATGCAGGTGAGAACCTTGGCTACTTGGAATACCATGATCACTAGCTTGGGTGTGCACGGGTATAGAGATGAAGCCTTATCCCTTTTTGATGAAATGGAGAAGGCAAATGAGGTTCCTGATGCTATCACTTTTGTTGGTGTTCTGAGTGCTTGCGTTTATATGAATGACCTGGAACTAGCTCAGAAGTATTTCAATCTTATGACAGATCATTATGGTATAACACCTATCTTGGAACACTATACATGCATGGTTGAAATCTATACTCGTGCTATTGAGTTGGATGAGAATTACACATCAGGGAACACCATGGAAGCTAATCATGATGTTGCAGAATTGCTCCACAAGAACAAACTCACTAGTTTCGACGACATTAAAAAACTTATACACAAGCAATACGGGGATTTGGATTTCTCAGAACTAGTTTTGGACCATTCCTCCACGAGCTCTCCACCTCAAGTCCCGAGCTCAAGGGGGATGCAGATTGATATCAGCAAAACAAGTTGA 1452 0.4325 MKVACCSPDIINAPYLGTPRTRFGSEEALVLLQKCSNFKQLKQVHGKIIRFGLTYDQLLMRKLIQLSSSYGKMKYATLVFDQLNAPDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSALDLGIVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVFAWTTVISGLVACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGYLDDARTVFDMMQVRTLATWNTMITSLGVHGYRDEALSLFDEMEKANEVPDAITFVGVLSACVYMNDLELAQKYFNLMTDHYGITPILEHYTCMVEIYTRAIELDENYTSGNTMEANHDVAELLHKNKLTSFDDIKKLIHKQYGDLDFSELVLDHSSTSSPPQVPSSRGMQIDISKTS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0368 483 TIGRFAM PPR: pentatricopeptide repeat domain 295 319 IPR002885 -
Gso16g0368 483 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Gso16g0368 483 TIGRFAM PPR: pentatricopeptide repeat domain 160 189 IPR002885 -
Gso16g0368 483 TIGRFAM PPR: pentatricopeptide repeat domain 89 122 IPR002885 -
Gso16g0368 483 TIGRFAM PPR: pentatricopeptide repeat domain 191 221 IPR002885 -
Gso16g0368 483 TIGRFAM PPR: pentatricopeptide repeat domain 324 357 IPR002885 -
Gso16g0368 483 Pfam PPR repeat family 86 133 IPR002885 -
Gso16g0368 483 Pfam PPR repeat family 323 367 IPR002885 -
Gso16g0368 483 Pfam PPR repeat family 218 266 IPR002885 -
Gso16g0368 483 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 431 - -
Gso16g0368 483 Gene3D Tetratricopeptide repeat domain 21 138 IPR011990 GO:0005515
Gso16g0368 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Gso16g0368 483 MobiDBLite consensus disorder prediction 461 483 - -
Gso16g0368 483 Gene3D Tetratricopeptide repeat domain 139 291 IPR011990 GO:0005515
Gso16g0368 483 Gene3D Tetratricopeptide repeat domain 295 432 IPR011990 GO:0005515
Gso16g0368 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Gso16g0368 483 PANTHER BNAA06G32750D PROTEIN 21 431 - -
Gso16g0368 483 SUPERFAMILY TPR-like 167 351 IPR011990 GO:0005515
Gso16g0368 483 Pfam PPR repeat 162 189 IPR002885 -
Gso16g0368 483 Pfam PPR repeat 295 319 IPR002885 -
Gso16g0368 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0368 Gso-Chr16 4190969 4193202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0368 31 455 Glycoside Hydrolase AT3G49170 26.498 8.44e-46 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0368 - - gmx:100789790 974.926