Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0359 ATGATCAGAATCAGATCTAACTTACCTCTTTTCTCTGTTGTGCTATCTCGCATCAGCCATAACTCAATCGCTGTTAATCATTGTCATATAGTAAAGAAGCCCCTTATGGGTGCTACTTTCAATTTCTTTGACCCTTTTAAGTCTGAAACTTTTTTAGCACCACAAAAGTTTGGTTTCTCAGTCAAGCCTTTTTCTACTTCATCTTCAACCAGAAGCCTTGGGGCTTCAACTGATGCCCCTGCACATGGGGCCTTGGGTGACGATGATGATGATGGGGATGGGGATGGGGATGAGGATGATGATGATCACGACAACAATAAAGATAAGAATGATACCCATTGTAGTCAGTTACATTTAAGGGATGATGGTCTTGCCAAAGATGTTAAAACCATTTTGGCTATAATGCATGAAGTGGGTTCTGGACCATCTCAAATTAAGCAGAAGCTTGAGCATTGCAGTATTGTTCTATCACCCGAGCTGGTTGTGGAGGTCCTTTCGAGAACTCGTAATGATTGGGAAGCAGCTTTCACTTTTTTCTTGTGGGCTGGCAAGCAACCGGGGTATGCTCATTCGGTTCGCGAGTACCATTCTATGATCTCCATCCTTGGCAAAATGAGGAAGTTTGATACTGCTTGGAACTTGATTGAGGAAATGAGAGGAGGTAGAAATGGTCTATCTCTTGTCACTCCGCAAACACTGTTGATTATGATAAGGAAATACTGTGCTGTACATGATGTTGCAAGGGCTATCAATACCTTCTATGCTTATAAACGGTTTAACTTTCGAGTTGGGCTAGAGGAATTTCATAGCCTTCTTTCTGCCCTTTGTCGGTATAAGAATGTGCAAGATGCTGAGTACTTACTGTTCTGCAACAAAGATGTATTCCCGTTAGACACCAAAAGCTTTAACATCATTCTGAATGGATGGTGTAATTTGATTGTTAGCACTAGTCATGCAGAAAGAATATGGCATGAGATGATAAAGAGAAGAATCCAACACGATGTTGTCTCCTATGGAAGTATCATATCTTGCTATTCAAAATCTTCTAAACTTTACAAGGTGCTCAGGATGTTTGATGAGATGAAGAAAAGGAAGATTACTCCAGATAGGAAGGTTTATAATGCTGTCATTTATGCCCTAGCAAAGGGCAGGCTTGTGAAAGAAGCTGTCAATCTCATTGGAACAATGGAAGGCAATGATGTTACTCCAGATGTTGTGACTTACAACTCCCTGATCAAGCCTCTTTGCAAAGCCCACAAAGTTGATGAAGCTAAACAACTTTTTGATGAGATGTTGAAACGGCACCTCTCCCCAACAATTCAAACTTTTCATGCTTTCTTCCGTATATTGCGGACCAAGGAAGAAGTATTTGAGCTCTTGGACAAAATGAAAGAGCTGCGGTGCTACCCAACCATTGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGCTGGTGCCAGCTTGATGATGTATTTAAGATATGGGATGCAATGAGGGAAGATGAAATAAGCCATGATCGTAGTTCATATATAGTGCTGATTCATGGGCTGTTTCTAAACGGAAAGCTAGAGGAAGCACAAAGATATTATGCAGAGATGCAAGAGAAAGGCTTCCTACCTGAACCGAAGACAGAAGAAATGCTTCAAGCATGGGTTTCCGGGAAACAGGCTACAGAGGGTCAGGAGAAAGATTTAGAACCAAGTCAACTGGAAAATGATACTCTTAAAAAGAAAGTAAAGGGCATACCGAGTAAATTTGACAGGAAAAAAGCCTTTCTTCGTGAACCTGAGACCAGAAGAGTAACAAGAGAACGGGGTTTTTCTTTCTGGGAGCAGTAA 1839 0.41 MIRIRSNLPLFSVVLSRISHNSIAVNHCHIVKKPLMGATFNFFDPFKSETFLAPQKFGFSVKPFSTSSSTRSLGASTDAPAHGALGDDDDDGDGDGDEDDDDHDNNKDKNDTHCSQLHLRDDGLAKDVKTILAIMHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCNKDVFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELRCYPTIETYIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQRYYAEMQEKGFLPEPKTEEMLQAWVSGKQATEGQEKDLEPSQLENDTLKKKVKGIPSKFDRKKAFLREPETRRVTRERGFSFWEQ* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0359 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Gso16g0359 612 Gene3D Tetratricopeptide repeat domain 424 599 IPR011990 GO:0005515
Gso16g0359 612 MobiDBLite consensus disorder prediction 88 102 - -
Gso16g0359 612 Gene3D Tetratricopeptide repeat domain 128 286 IPR011990 GO:0005515
Gso16g0359 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Gso16g0359 612 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 96 602 - -
Gso16g0359 612 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Gso16g0359 612 TIGRFAM PPR: pentatricopeptide repeat domain 406 439 IPR002885 -
Gso16g0359 612 TIGRFAM PPR: pentatricopeptide repeat domain 195 219 IPR002885 -
Gso16g0359 612 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Gso16g0359 612 TIGRFAM PPR: pentatricopeptide repeat domain 509 540 IPR002885 -
Gso16g0359 612 TIGRFAM PPR: pentatricopeptide repeat domain 474 506 IPR002885 -
Gso16g0359 612 PANTHER OS01G0816000 PROTEIN 96 602 - -
Gso16g0359 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Gso16g0359 612 Gene3D Tetratricopeptide repeat domain 287 423 IPR011990 GO:0005515
Gso16g0359 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Gso16g0359 612 Pfam PPR repeat 195 219 IPR002885 -
Gso16g0359 612 Pfam PPR repeat 509 538 IPR002885 -
Gso16g0359 612 Pfam PPR repeat 474 502 IPR002885 -
Gso16g0359 612 Pfam PPR repeat family 403 447 IPR002885 -
Gso16g0359 612 Pfam PPR repeat family 334 382 IPR002885 -
Gso16g0359 612 MobiDBLite consensus disorder prediction 67 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0359 Gso-Chr16 4053628 4056354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0359 225 575 Glycosyltransferase AT1G05670 24.523 5.80e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0359 - - gmx:100785546 1170.61