Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0318 ATGGAAGTAGCTCTTTCCCCTCAAGTACAAAAGCCGAATTTGCAGACAACAGGTCGCAAGATTTCATGTACTGGATCTCAGAAGGATCTGTGGCATGTTGTTAGAGAAGGATCTCTAAGCGATGTAGAGCTGGCCTTGGCATCATTGAAGAAGAGTGGGGGCAATATCAATTTGAGAAACACTTTTGGGCTGACTCCCCTTCATATTGCAACTTGGAGAAACCACATTCCCATTGTAGGGAGGCTTCTTGCTGCTGGTGCAGATCCTGATGCCCGAGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTTATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACACTGGAGGACTCTAAATCTCGAATACCTGTAGATCTCTTATCTGGCTCTGTATTTCAGGTTCTTGGAGATGAACACAGTTCAGTGGCTACTGAGGTTTTTAGTTGGGGCAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGTTACCATGCAAAGTTGATTCACTTGGTGGTTCATTCATAAAACTAATTTCTGCTGGGAAATTCCATAGTGTGGCACTCACTGCTCGTGGAGAAGTGTATACTTGGGGATTTGGGAGGGGTGGCCGTCTAGGGCATCCTGATTTTGATATACACAGTGGCCAAGCTGCTGTCATCACTCCCCGCCAGGTGACTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACGGTTATTTCTACCCAGGGTGGGGAAGTGTTCACCTGGGGATCCAATAGAGAGGGACAGCTTGGATACCCTTCCGTTGATACACAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAGAATTGTTGCTGTTGCTGCCGCAAACAAACACACTGCTGTAGTTTCTGATTTGGGCGAAGTTTTTACTTGGGGTTGCAACAGGGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGGAAGACTTTGACCAGAGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGACGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTAGTAGTTAGTAGAAACTTAAAGAAAAGTGGAAGCACTCCTTTAAAATTTCACCGCAAGGAACGACTTAATGTGGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCTTCTGATCCTGATCTTAGATGCCAACAGTTGTATGCTATGTGTGGAAGGAATATGGTGAGCATATCAGCTGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCCCTTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACATCAGTTTCAGTTGGTGAAACACATTTACTTATTGTGGCTTCACTGTATCATCCTGTCTACCCTCCCAACATGATTGAGAATTCTCAGAAATCCAAGCTGAATAACAAGGATGATGTGGAAGAGTTAAATGAAGACATTTTATTTGAAGATATCGATTCCAGTAACATAATATCTAATGTGCAAAATGATACTTTAAGCCAGAGATCTATACCCAGCTTAAAAAGCCTTTGTGAAAAAGTAGCTGCCGAGTGTCTAGTAGAGCCACGAAATGCTGTACAACTGCTTGAGATTGCTGATTCTCTTGGAGCTGATGATTTGAAGAAATATTGTGAGGAGATTGTCATGCGCAACCTTGATTTTATATTTGCAGTATCATCACATACTGTAGCAAGTGCCTCACTAGATATTCTGGCTAACCTCGAGAGGTTGTTCGACCAGAGATCATCTGAGCCATGGAGTCACCGTCGGCTCCCTACTCCAACTGCTACTTTCCCTGCCATCATCAACAGTGAAGAGGATGATAGTGAGATAGAGTTTCAGAGGACTCGTGACAAACCCATGAAATTGGAGAAAGTCCTCAGGCTAGATTCTTTTCTACAGCCAAAGGATGATCCTAATAAAGAAATCTCCAAAGTAGTCCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGATAAGCAGTCTAATGGGCATCTTCTTGATGACCAGCAGATTGCAAAGCTTCAATCTAAGTCAGCACTTGAGAGCTCACTTGCAGAGCTAGGTGTTCCTGTTGAGACATCACGGTATAAAGAATCATCTTCTATGTTACCAGAAGGGAAAGGTAGTAAGAAGGGTAAACTATCGAAAAAACAAAGGAGAAAGAGTGGCAATTCAAACATAGAGCAGACAGAAATAGAATCTGTTTACTCTAAAAGTGAAGCCATTCCCAAATCTGAGGACCTGTTGGACATTGACATCATGGGGATTCCTGATTCAAAGGTGGAAGAGGATGCCGTGTGTGAACAGATCAGCGCAGATGAGGGTGGAAAAGATTTAGCTTTTGTTGTGCAGAAGAAAGATGCTTTAGAGTTGTTGAAAGCCAAGGGTCCATCACCAAAGGCTTCAAAGAAGAAGAGGAGCAAGAAGGGTGGGCTTTCTATGTTTCTGAGCGGCGCTCTTGATGAAGCCCCGAAGGAGGTGGCTCCCCCTCCACCAACACCAACACCAAAACACGAGGGTCCTGCATGGGGTGGGGCGAAGTTCACGAAGGGTTCTGCTTCTCTTCGTGAAATCCAGGATGAACAAAGCAAAATAAAGGTAAACAAACCGGCTGGGAGCAAAGATAAGGTTGAAGATCTTTCTGATTTTGGCAGTGGGGGCAAAATAAAGTTGAGTTCATTTCTTCCTTCCAGCCCAATACCTGTTACCTCGTCTCGAAGTTCCCAGGTATCTGATGGAGAAATAAGCACCCCTCCTTGGGCTGCTTCCGGAACTCCTCCCCAACCTTCTCGGCCATCGTTAAGGCACATCCAAATGCAACAGGGAAAGAAACAACAAAGCCTTTCGCACAGTCCAAAGACTACAACAGCTGGATTTTCCATCCCTACCTGTCAAGGCTCGCCGTCCGAAACAACCGGTGTGAGTCGCTGGTTCAAGCCTGAGGTGGAAACACCGTCCTCAATTCGTTCTATTCAAATTGAGGAAAAGGCTATGAAAGATCTCAAGCGCTTCTATAGCAGTGTCAAGATTGTCAGAAAGCAATCTTGA 3243 0.4493 MEVALSPQVQKPNLQTTGRKISCTGSQKDLWHVVREGSLSDVELALASLKKSGGNINLRNTFGLTPLHIATWRNHIPIVGRLLAAGADPDARDGESGWSSLHRALHFGYLAAASILLQHGASITLEDSKSRIPVDLLSGSVFQVLGDEHSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVISTQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSRIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGSTPLKFHRKERLNVVSIAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVSISAGKYWTAAVTATGDVYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVYPPNMIENSQKSKLNNKDDVEELNEDILFEDIDSSNIISNVQNDTLSQRSIPSLKSLCEKVAAECLVEPRNAVQLLEIADSLGADDLKKYCEEIVMRNLDFIFAVSSHTVASASLDILANLERLFDQRSSEPWSHRRLPTPTATFPAIINSEEDDSEIEFQRTRDKPMKLEKVLRLDSFLQPKDDPNKEISKVVRAIRKKLQQIEMLEDKQSNGHLLDDQQIAKLQSKSALESSLAELGVPVETSRYKESSSMLPEGKGSKKGKLSKKQRRKSGNSNIEQTEIESVYSKSEAIPKSEDLLDIDIMGIPDSKVEEDAVCEQISADEGGKDLAFVVQKKDALELLKAKGPSPKASKKKRSKKGGLSMFLSGALDEAPKEVAPPPPTPTPKHEGPAWGGAKFTKGSASLREIQDEQSKIKVNKPAGSKDKVEDLSDFGSGGKIKLSSFLPSSPIPVTSSRSSQVSDGEISTPPWAASGTPPQPSRPSLRHIQMQQGKKQQSLSHSPKTTTAGFSIPTCQGSPSETTGVSRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0318 1080 SUPERFAMILY Ankyrin repeat 34 136 IPR036770 -
Gso16g0318 1080 MobiDBLite consensus disorder prediction 922 948 - -
Gso16g0318 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Gso16g0318 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Gso16g0318 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Gso16g0318 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Gso16g0318 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 206 259 IPR000408 -
Gso16g0318 1080 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1079 - -
Gso16g0318 1080 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Gso16g0318 1080 MobiDBLite consensus disorder prediction 758 796 - -
Gso16g0318 1080 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Gso16g0318 1080 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Gso16g0318 1080 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Gso16g0318 1080 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Gso16g0318 1080 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Gso16g0318 1080 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Gso16g0318 1080 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Gso16g0318 1080 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1079 - -
Gso16g0318 1080 SMART ANK_2a 96 125 IPR002110 GO:0005515
Gso16g0318 1080 SMART ANK_2a 62 91 IPR002110 GO:0005515
Gso16g0318 1080 SUPERFAMILY RCC1/BLIP-II 118 431 IPR009091 -
Gso16g0318 1080 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Gso16g0318 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Gso16g0318 1080 Pfam Ankyrin repeats (3 copies) 41 127 IPR002110 GO:0005515
Gso16g0318 1080 MobiDBLite consensus disorder prediction 859 1039 - -
Gso16g0318 1080 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Gso16g0318 1080 Coils Coil 520 540 - -
Gso16g0318 1080 MobiDBLite consensus disorder prediction 992 1039 - -
Gso16g0318 1080 Coils Coil 704 724 - -
Gso16g0318 1080 SUPERFAMILY RCC1/BLIP-II 401 507 IPR009091 -
Gso16g0318 1080 Gene3D - 25 128 IPR036770 -
Gso16g0318 1080 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Gso16g0318 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Gso16g0318 1080 MobiDBLite consensus disorder prediction 961 983 - -
Gso16g0318 1080 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Gso16g0318 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Gso16g0318 1080 Gene3D - 129 390 IPR009091 -
Gso16g0318 1080 Gene3D - 391 510 IPR009091 -
Gso16g0318 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0318 Gso-Chr16 3614259 3623478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0318 35 136 Acyl Lipid Metabolism Gene Families AT5G53470 34.314 1.72e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0318 K24810 - gmx:100814063 2045.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0964 19 36820142 36830301 Gso16g0318 16 3614259 3623478 GST