Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0301 ATGGAGATAGTGAACGGGTCACACAATTTTGAGATAAAGGGCTACTCTCTGACAAAGGGAATGGGCGTTGGGAAATACATCAGAAGTGAGACATTCACCGTAGGAGGGTACCAGTGGGCCATATACTTCTACCCTGACGGAAAATACCCAGAATATAAATTCACTTATGTCTCCATTTTCATCGCACTCCTTTCCAAGGGCACCAATGTCCGCGCTCTATTTGACCTCATGTTGCTCGACCAGAGTGGCCAAGGGAACCACAAGGTTCACTTTAGTCCCTCCCTCCACAATGCTCCTTACACTCTCAAAAGTTGTGGCAGCATGTGGGGGTATAAACGATTTTATAGACGGAGAAAACTTGAGGCGTCAACTTTCCTCAAGGATGATTGCTTGAAGATTAACTGCACTGTCGGTGTTCTGGTGTCGTCCATTGATTCTACTAAGTTAAACCCAATCCAAGTTCCTGAGTCTGATTTGGGGGCAGATTTTGCAATCTTATTAGAGAATGAGCAATTTTCTGATGTGACTTTCACGGTCAGTGGAGAAAGGTTTCATGCAAATAAACTTGTTTTGGTTGCTCGGTCAACAGTGTTCCAAACTGAATTTTTCAAAGGGATGGAGAAGGATGACCGTGGTGACATAGTTGTTAATGATATGGAACCCAAGGTTTTCAAGGCTTTGCTTCATTATATTTATAGGGACACTCTTATAGAAGATGAAGAGCTCTTTATGCTGCATTCGTCATTATTGCCTTCGCTGTCTGAATCATTTCCAGCCAAGTTGTTAGCTGCTGCAGAGAAGTATGAGTTACCAAGACTTAAGCTGATGTGCGAATCTGTACTTTGCAAAGACATATCGATAGATTCTGTTGCCTATATTCTCCCTCTGGCTGATCGTTATCGTGCTACTGAATTGAAGTCCATCTGTCTGAAATTCTCTGCTCAAAACCTTCGTGCTGTGATGCAATCTGATGGTTTCAAGTATCTTAAGCAAAATTGTCCATGGCTACTAGTAGAACTGCTAAAGACTGTGGGAGGGTGCGAGGAGAAATTTAGTGGAAAAAGAAAATATGCAACTATGAGGGGCCAATCTTCTGGTGGTGATGACACCGGTGCTAGGAGTGTAAACAAAACTGAAGGAAGTCCAAGCTTAAGGGAGGATACCCATTCTGAGAGTGTTCACCAACAATAA 1191 0.4291 MEIVNGSHNFEIKGYSLTKGMGVGKYIRSETFTVGGYQWAIYFYPDGKYPEYKFTYVSIFIALLSKGTNVRALFDLMLLDQSGQGNHKVHFSPSLHNAPYTLKSCGSMWGYKRFYRRRKLEASTFLKDDCLKINCTVGVLVSSIDSTKLNPIQVPESDLGADFAILLENEQFSDVTFTVSGERFHANKLVLVARSTVFQTEFFKGMEKDDRGDIVVNDMEPKVFKALLHYIYRDTLIEDEELFMLHSSLLPSLSESFPAKLLAAAEKYELPRLKLMCESVLCKDISIDSVAYILPLADRYRATELKSICLKFSAQNLRAVMQSDGFKYLKQNCPWLLVELLKTVGGCEEKFSGKRKYATMRGQSSGGDDTGARSVNKTEGSPSLREDTHSESVHQQ* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0301 396 ProSiteProfiles BTB domain profile. 173 240 IPR000210 GO:0005515
Gso16g0301 396 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 2 358 IPR045005 GO:0016567
Gso16g0301 396 Gene3D - 284 358 - -
Gso16g0301 396 MobiDBLite consensus disorder prediction 358 396 - -
Gso16g0301 396 SMART math_3 10 120 IPR002083 GO:0005515
Gso16g0301 396 ProSiteProfiles MATH/TRAF domain profile. 5 137 IPR002083 GO:0005515
Gso16g0301 396 Pfam BTB/POZ domain 166 283 IPR000210 GO:0005515
Gso16g0301 396 MobiDBLite consensus disorder prediction 380 396 - -
Gso16g0301 396 MobiDBLite consensus disorder prediction 363 379 - -
Gso16g0301 396 SUPERFAMILY TRAF domain-like 3 140 - -
Gso16g0301 396 SUPERFAMILY POZ domain 153 283 IPR011333 -
Gso16g0301 396 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 2 358 - -
Gso16g0301 396 CDD MATH 6 137 IPR002083 GO:0005515
Gso16g0301 396 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 4 140 IPR008974 GO:0005515
Gso16g0301 396 Gene3D Potassium Channel Kv1.1; Chain A 149 279 IPR011333 -
Gso16g0301 396 CDD BACK_AtBPM-like 282 343 IPR034090 -
Gso16g0301 396 SMART BTB_4 173 285 IPR000210 GO:0005515
Gso16g0301 396 CDD BTB_POZ_BPM_plant 159 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0301 Gso-Chr16 3433883 3436519 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0301 K10523 - gmx:100775905 787.334