Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0299 ATGCACACCGCGAGCAGGAGCAACGGCGGCGGCGGCGGCGTGCTGGCGTCGCGGACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATAAAGGGATACTCGCTGGCGAAGGGGATCGGAGTCGGAAAACACATCGCGAGCGAGACGTTCACGGTAGGAGGGTACCAGTGGGCGATATACTTCTACCCTGACGGCAAGAACCCAGAGGACAACTCCGCCTACGTCTCCGTCTTCATCGCGCTCGCCTCCGAGGGCACCGACGTCCGCGCCCTGTTTGAGCTCACGCTGCTCGACCAGAGCGGGAATGGGAAGCACAAGGTGCATAGCCACTTCGATCGCTCGCTCGAGAGCGGCCCCTACACTCTCAAATACCGCGGCAGCATGTGGGGGTATAAGAGATTTTTCAAACGGGCTCAACTCGAGGCGTCAACTTTCCTCAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCTTCCATTGATTGTTCCAAGTTAAACACAATACAGGTTCCCGAATCCGATATTGGGGCACATTTCGGGATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTCGGTGGAGAAAGGTTTCATGCACATAAGCTTGTTTTGGCTGCTCGATCAACTGCATTTGAAACCGAGTTTTTTAATGGGATGGAGGAGGATGATCATGATGTAGTTGTTACTGACATGGAACCAAAAGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTAATAGATGATGAAGAGCTCTTTATGTCACGTTCATCATTCTTGCCTTCGGTATCTGAATCATTTGCTGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAACTGATGTGCGAGTCTGTACTTTGCAAAGACATCTCCATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCGTGCTACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTCGCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAATTGTCCCTTGCTGCAATCAGAACTGCTAAAGACTGTGGCAGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAGTGTCGAAGTGTGTGGGCCCAATTTTCTGATGGTGGTGACACCAATGATAGGAGTGTAAGACAACAAACCTGGGAAAATGGTGTTGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCTGATGGTGTTAACAACAATGATAGGAGTCCAGGGCAAGAAACCTGA 1305 0.4851 MHTASRSNGGGGGVLASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPESDIGAHFGMLLENEEGSDVTFSVGGERFHAHKLVLAARSTAFETEFFNGMEEDDHDVVVTDMEPKVFKALLHFIYRDTLIDDEELFMSRSSFLPSVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYRATELKSVCLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVHLSDGVNNNDRSPGQET* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0299 434 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 13 383 - -
Gso16g0299 434 CDD BACK_AtBPM-like 307 368 IPR034090 -
Gso16g0299 434 CDD BTB_POZ_BPM_plant 185 307 - -
Gso16g0299 434 SMART math_3 34 146 IPR002083 GO:0005515
Gso16g0299 434 SUPERFAMILY POZ domain 178 308 IPR011333 -
Gso16g0299 434 Pfam BTB/POZ domain 191 308 IPR000210 GO:0005515
Gso16g0299 434 Gene3D - 309 383 - -
Gso16g0299 434 ProSiteProfiles MATH/TRAF domain profile. 29 163 IPR002083 GO:0005515
Gso16g0299 434 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 28 167 IPR008974 GO:0005515
Gso16g0299 434 SMART BTB_4 199 310 IPR000210 GO:0005515
Gso16g0299 434 CDD MATH 30 163 IPR002083 GO:0005515
Gso16g0299 434 MobiDBLite consensus disorder prediction 1 24 - -
Gso16g0299 434 ProSiteProfiles BTB domain profile. 199 265 IPR000210 GO:0005515
Gso16g0299 434 SUPERFAMILY TRAF domain-like 26 165 - -
Gso16g0299 434 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 13 383 IPR045005 GO:0016567
Gso16g0299 434 Gene3D Potassium Channel Kv1.1; Chain A 175 304 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0299 Gso-Chr16 3406821 3411247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0299 K10523 - gmx:100818306 867.455