Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0296 ATGCTAGCATGTCCTAGCAGCTCCCTCCATGGCCTCGCCACGCTCCAACGCCATTCCCAACCATCTCACTTCCTCCTCTCCAAGCCTCTCTTCTTCCCTCGCTTCCACGCTTCCCGCAAATGCAACTTCCGCTCTCTCCTTTCCGGCAACAACCGTCGCCGCTCCGCCGTCAGAGCCTCCGCGGACTCGCCGGAGGTGTCGGAGTCCGTCGTCGGTGCCGACGGTGGAGGCTTGCAACCGTATTCCGTGAAGATTCCCGTTGGTGATAGACATATTTTGGTTGAAACCGGTTCTATAGGAAGACAAGCAAGTGGCTCTGTTACAGTTACAGATGGAGAAACTATTGTGTACACAACTGTTTGCTTGGATGATGTTCCTTGTGAACCATCTGACTTTTTCCCTCTTTCTGTTATTTATCAAGAGCGTTTTTCAGCAGCTGGTCGCACTAGTGGAGGTTTTTTTAAGCGAGAAGGAAAGATAAAAGATCATGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTACGTCCTACAATGCCAAAGGGTTTCTATCATGAAACTCAAATATTATCTTGGGTTTTGAGCTATGATGGATTGCACTCCCCTGATTCTTTGGCTATCACTGCAGCTGGTATAGCAGTTGCACTTTCAGAAGTACCAATGTCAAAAGCAGTTGCTGGAGTTCGTGTTGGTCTTGTTGGTGATAAGTATATAGTAAATCCTACGACTGAGGAGATGGAACACTCTGAGTTGGACCTCTTGCTGGCTGGCACAGATAGTGCAATATTGATGATAGAGGGCTATAGCAGTTTTCTCCCAGAAGAGAAGTTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCCTTGGTTAAGAAGTGTGGGAAGCCAAAGATGTTGGATGCCATTAAGTTGCCTCCTCCCGAACTTTATGAACATGTTGAAGCAATTGCTGGTGATGAGTTAGTAAAAGTTCTTCAAATTAGAAACAAAATACCCAGAAGGAAAGCCCTTTCATCATTAGAAGAAAAGGTTCTGAAGATACTCACAGAAAATGGGTTTGTCTCAAATGATTCAACACTGAGGAGTAATTCTGAGACCATTGCGGAGATTCTTGAGGTTGAGGATGAAGACGAGGAAGTAATTGTTGATGGTGAAGTTGACGAAGGTGATGTTCATATAAAGCCAACTCCACGTAAACCAGCCCTTTTATTTTCTGAGGTGGATGTGAAGTTGGTATTTAAGGAAATTACTTCGAAATATTGGAGGAAGCGCATAGTAGAGGGGGGGAAAAGGAGTGATGGGCGAACACCTGACGGAATACGTCCAATTAACTCGAGATGTGGCCTATTACCTAGAGCACATGGAAGTACTCTTTTTACAAGAGGCGAGACACAGGCACTAGCAGTTGTTACACTTGGAGATAAACAAATGGCGCAAAGAATTGACACCCTTGATGGTGTTGATGAATTCAAGAGGTTCTATCTGCAGTATTCATTTCCTCCTTCATGTGTTGGGGAAGCTGGCCGGATTGGTGCCCCAAGTAGAAGAGAAATTGGTCATGGGATGCTTGCTGAGAGATCCCTTGCACCAATTTTGCCTTCTGAAGATGATTTCCCTTACACTATACGTGTTGAGAGTACTATCACTGAAAGCAATGGCTCTTCAAGCATGGCTTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGTGTTCTATTGCTGGAATTGCAATGGGTATGGTACTGGACACCAAGGAATTTGGTGGAGATGGAACTCCACTTATTCTGTCTGACATAACTGGATCTGAAGATGCGTCTGGAGATATGGATTTCAAGGTTGCTGGAAATGGAGATGGCATAACTGCATTTCAAATGGACATTAAGGTGGGTGGAATTACTTTGCCCATCATGAGAAAGGCACTTCTACAAGCAAGAGATGGCAGGAAGCATATACTTGGAGCAATGATGAATTCCTCACCTCCTCCAGCAAAAATGCTTTCCAAGTATGCTCCTCTGATTCATGTTATGAAGGTAAGACCGGATAGAATAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTGAAGAGCATTATTGAGGAATCTGGAGTAGACACTATTGATACAGAAGATGATGGCACTGTGAAAATATTTGCAAAAGATTTACCTAGTTTAGAGAAGTCTAAAGCTATTATTAATAGTTTGACGATGGTTCCAACTATTGGTGATATATATAGGAACTGTGAAATCAAATCAATAGCCTCATATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTATGTCATATCAGTGAACTGAGTTCAGGTTGGCTACCCAAGGCAGAAGATGTTTTTAAAGTGGGAGATCGCATTGATGTAAAGCTTATAGAGGTAAATGAAAAGGGGCAGCTGCGCCTTAGTCACCGAGCACTGCTTCCTGATACAGAAGCTTCACCAAAAGATGGTTTAGTGGAAGAAAAGACTGAACAGTCTAAGGATAAGTCTAGCACTCCCAATGTCACAGCCTCTTCTAAAAGAAGTTCAGAGGATGATTCTGTACTTCCTTCTAAAAAGTTTGTCAGGAGATTGGTAAGCTCTTCCCAGGATAAGCCTTTCACTAACAAAGACAAGAGAAAGAAGAGTAGCAACAAAGCAGTTGGTAGTGTGTCTGGCGAAGATGAAAGCAGTTTGGTTAGTGGAGAAGCCTAA 2754 0.4346 MLACPSSSLHGLATLQRHSQPSHFLLSKPLFFPRFHASRKCNFRSLLSGNNRRRSAVRASADSPEVSESVVGADGGGLQPYSVKIPVGDRHILVETGSIGRQASGSVTVTDGETIVYTTVCLDDVPCEPSDFFPLSVIYQERFSAAGRTSGGFFKREGKIKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAITAAGIAVALSEVPMSKAVAGVRVGLVGDKYIVNPTTEEMEHSELDLLLAGTDSAILMIEGYSSFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMLDAIKLPPPELYEHVEAIAGDELVKVLQIRNKIPRRKALSSLEEKVLKILTENGFVSNDSTLRSNSETIAEILEVEDEDEEVIVDGEVDEGDVHIKPTPRKPALLFSEVDVKLVFKEITSKYWRKRIVEGGKRSDGRTPDGIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDTLDGVDEFKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLAPILPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNGDGITAFQMDIKVGGITLPIMRKALLQARDGRKHILGAMMNSSPPPAKMLSKYAPLIHVMKVRPDRINLIIGSGGKKVKSIIEESGVDTIDTEDDGTVKIFAKDLPSLEKSKAIINSLTMVPTIGDIYRNCEIKSIASYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEVNEKGQLRLSHRALLPDTEASPKDGLVEEKTEQSKDKSSTPNVTASSKRSSEDDSVLPSKKFVRRLVSSSQDKPFTNKDKRKKSSNKAVGSVSGEDESSLVSGEA* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0296 917 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 681 749 IPR036612 GO:0003723
Gso16g0296 917 Pfam KH domain 689 745 IPR004088 GO:0003723
Gso16g0296 917 Gene3D - 401 681 IPR027408 -
Gso16g0296 917 ProSiteProfiles Type-1 KH domain profile. 685 745 - -
Gso16g0296 917 Gene3D K Homology domain, type 1 682 754 IPR036612 GO:0003723
Gso16g0296 917 MobiDBLite consensus disorder prediction 849 864 - -
Gso16g0296 917 CDD PNPase_KH 685 746 - -
Gso16g0296 917 Gene3D - 73 305 IPR027408 -
Gso16g0296 917 CDD S1_PNPase 755 823 - -
Gso16g0296 917 Pfam 3' exoribonuclease family, domain 1 90 220 IPR001247 -
Gso16g0296 917 Pfam 3' exoribonuclease family, domain 1 449 582 IPR001247 -
Gso16g0296 917 SUPERFAMILY Ribosomal protein S5 domain 2-like 82 220 IPR020568 -
Gso16g0296 917 SUPERFAMILY Ribosomal protein S5 domain 2-like 422 594 IPR020568 -
Gso16g0296 917 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 415 825 IPR012162 GO:0003723|GO:0004654|GO:0006402
Gso16g0296 917 SMART S1_6 753 824 IPR022967 -
Gso16g0296 917 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 315 445 IPR036456 GO:0003723|GO:0006396
Gso16g0296 917 SMART kh_6 684 749 IPR004087 GO:0003676
Gso16g0296 917 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 60 885 - -
Gso16g0296 917 MobiDBLite consensus disorder prediction 899 917 - -
Gso16g0296 917 Gene3D - 755 826 IPR012340 -
Gso16g0296 917 Pfam 3' exoribonuclease family, domain 2 224 286 IPR015847 -
Gso16g0296 917 Pfam S1 RNA binding domain 762 824 IPR003029 GO:0003676
Gso16g0296 917 SUPERFAMILY Ribonuclease PH domain 2-like 576 676 IPR036345 -
Gso16g0296 917 CDD RNase_PH_PNPase_2 449 676 - -
Gso16g0296 917 SUPERFAMILY Nucleic acid-binding proteins 748 829 IPR012340 -
Gso16g0296 917 MobiDBLite consensus disorder prediction 824 917 - -
Gso16g0296 917 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 60 885 IPR012162 GO:0003723|GO:0004654|GO:0006402
Gso16g0296 917 ProSiteProfiles S1 domain profile. 755 824 IPR003029 GO:0003676
Gso16g0296 917 SUPERFAMILY Ribonuclease PH domain 2-like 222 307 IPR036345 -
Gso16g0296 917 MobiDBLite consensus disorder prediction 834 848 - -
Gso16g0296 917 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 79 827 IPR012162 GO:0003723|GO:0004654|GO:0006402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0296 Gso-Chr16 3358378 3385968 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0296 K00962 - gmx:100785430 1580.84