Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0287 ATGTCTTCTCCAAGCAAGCGGCGAGAAATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCACTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTATGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTGAACGGAGAAGCTGCAGCTTTAATGATGCGTGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCTGAAGACATAGGAGCTGCCACAGAAGAGAACTCCAGTGATGAAGAGCTAAGTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGACCCCTAG 552 0.4221 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYEQRVKEYCEKYAKPEDIGAATEENSSDEELSEDEYDSSDEQVAGKADP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0287 183 MobiDBLite consensus disorder prediction 150 183 - -
Gso16g0287 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Gso16g0287 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Gso16g0287 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Gso16g0287 183 SMART ubc_7 4 148 - -
Gso16g0287 183 MobiDBLite consensus disorder prediction 156 172 - -
Gso16g0287 183 CDD UBCc 7 143 IPR000608 -
Gso16g0287 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Gso16g0287 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Gso16g0287 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 183 - -
Gso16g0287 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0287 Gso-Chr16 3259634 3262380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0287 3 150 Miscellaneous Gene Families AT3G17000 23.418 1.13e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0287 K10576 - gmx:548025 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0603 7 6400685 6403568 Gso16g0287 16 3259634 3262380 GST
Gso18g1958 18 52085131 52088012 Gso16g0287 16 3259634 3262380 PCT
Gso9g2126 9 45545613 45549046 Gso16g0287 16 3259634 3262380 PCT
Gso16g0287 16 3259634 3262380 Gso18g1958 18 52085131 52088012 PCT
Gso16g0287 16 3259634 3262380 Gso9g2126 9 45545613 45549046 PCT