Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0214 ATGACATTTTCCTTCTCCTTTCAGTACCATAGCTTCATGGATAACCTAGCAGCACCTTTCCATCATCTTAATCCTTATTTTGTTCATAACCCACAAACACACATGCCGCCAAGAAGCCATTCACCCTCTTCAATTTCTCTTGGAATGTCAGAAGCTCAGCTTGTTTCTTCTCCTCAATTTTCCCCACCAAAATTTTCTCCATTCTTTCACCCTTTTGGTGAGATAAGAACCTTGAATTCTGTGAGGGAATTGCATGCCCAGATTATCAAAATGCCAAAAAAGAGGAACTTGGTTACAATGGATGGAAGCATGATGAGAAACTACTTGCAATTTGGAGACTTTGAGTCAGCAACAAAGGTATTTTTTGTGGGTTTTGCAAGGAACTACCTTCTATGGAACTCTTTTATTGAGGAGTTTGCAAGTTTTGGAGGTGATTCACATGAGATTCTGGCGGTCTTCAAGGAATTGCATGATAAAGGAGTGAAATTTGACAGTAAAGCTCTCACTGTTGTTCTGAAAATTTGTCTGGCTTTAATGGAGTTGTGGCTTGGGATGGAAGTTCATGCTTGTCTGGTTAAGAGAGGCTTCCATGTTGATGTACACTTGAGTTGTGCATTGATCAATCTCTATGAGAAATATTTGGGAATAGATGGGGCAAATCAAGTTTTTGATGAGACCCCACTACAAGAAGATTTCTTGTGGAATACAATTGTTATGGCAAACTTGAGGAGTGAGAAGTGGGAGGATGCCTTGGAACTGTTCCGTCGAATGCAATCGGCTTCTGCCAAAGCCACTGATGGCACTATTGTCAAGCTGCTGCAAGCATGTGGAAAATTGAGAGCTCTCAATGAAGGGAAGCAGATTCATGGGTATGTTATAAGATTCGGAAGAGTGTCAAATACTTCAATTTGCAACTCTATAGTTAGCATGTACTCTAGGAACAATAGACTTGAACTAGCTAGGGTAGCTTTTGATTCAACTGAGGATCATAACTCGGCATCATGGAACTCGATAATTTCGAGTTATGCAGTCAATGACTGTTTGAATGGTGCCTGGGATCTCCTCCAAGAAATGGAATCTTCCGGCGTCAAACCAGACATTATAACTTGGAATTCTCTATTGTCTGGCCATCTTCTTCAGGGGTCATATGAAAATGTTCTCACCAATTTCCGGAGCCTGCAAAGCGCAGGCTTCAAGCCAGATTCATGTTCAATAACTAGTGCTCTACAAGCAGTCATTGGATTGGGTTGCTTTAATTTAGGGAAAGAAATCCATGGTTACATAATGAGAAGTAAGCTTGAGTATGATGTCTACGTTTGTACTTCTTTGGTGGATAAGTATATTAAGAACGATTGCTTAGATAAAGCTGAAGTAGTGTTCCATCATACAAAAAACAAAAATATTTGTGCCTGGAATTCATTGATATCTGGTTACACCTACAAGGGTTTGTTTGACAATGCTGAAAAGCTACTCAACCAGATGAAGGAGGAAGGAATAAAACCTGATTTGGTGACATGGAATAGTTTAGTTTCAGGTTATTCAATGAGCGGCCGCAGTGAGGAAGCATTGGCTGTGATCAATCGGATCAAGAGTTTGGGATTAACTCCTAATGTGGTGTCCTGGACTGCTATGATATCAGGCTGTTGTCAAAATGAGAACTACATGGATGCCCTACAGTTTTTCAGCCAAATGCAAGAAGAAAATGTAAAACCTAACTCTACTACCATTTGCACACTTCTCCGGGCATGTGCAGGCTCATCACTGTTAAAGATAGGTGAAGAGATACACTGCTTCAGTATGAGACATGGGTTTCTGGATGACATATATATAGCCACAGCCCTCATTGACATGTATGGTAAGGGAGGAAAACTTAAAGTAGCCCATGAGGTTTTCAGGAATATTAAGGAGAAAACACTACCATGTTGGAATTGCATGATGATGGGATACGCTATTTATGGCCATGGGGAAGAGGTATTTACTCTATTTGACGAAATGCGCAAAACTGGTGTTAGACCTGATGCTATAACCTTCACAGCTCTTCTATCTGGCTGCAAGAATTCAGGTTTAGTTATGGATGGGTGGAAGTACTTTGACAGCATGAAGACAGATTACAATATTAATCCAACAATTGAGCACTACTCTTGCATGGTAGATCTTCTTGGAAAAGCTGGCTTTCTTGATGAAGCTTTGGATTTCATTCATGCCGTGCCACAAAAGGCAGATGCTAGTATTTGGGGTGCTGTTCTTGCAGCCTGCAGACTTCACAAAGACATTAAGATAGCGGAGATTGCCGCTAGGAATCTCTTAAGGTTGGAGCCATATAATTCTGCTAACTATGCGTTGATGATGAACATATATTCCACTTTTGACAGATGGGGGGACGTGGAGCGCCTTAAAGAGTCAATGACTGCCTTGGGGGTGAAAATCCCAAATGTTTGGAGTTGGATACAAGTTAAGCAGACTATTCATGTGTTCTCCACAGAAGGGAAATCACATCCAGAAGAAGGAGAAATATATTTTGAGCTGTATCAATTAATCTCAGAGATAAAAAAGCTGGGGTATGTACTTGATATTAATTGTGTGCATCAGAACATTGATGACAGTGAGAAGGAGAAGGTTCTGCTCAGTCACACAGAGAAGTTGGCTATGACATATGGACTGATGAAAACTAAAGGAGGGTCACCAATCAGGGTGGTGAAGAACACAAGAATTTGTCATGACTGTCACACAACAGCTAAGTACATTTCCTTGGCTCGAAACCGCGAGATTTTCCTCAGAGATGGTGGCCGTTTTCACCATTTCATGAATGGAGAATGCTCCTGCAAAGATCGCTGGTAA 2838 0.4098 MTFSFSFQYHSFMDNLAAPFHHLNPYFVHNPQTHMPPRSHSPSSISLGMSEAQLVSSPQFSPPKFSPFFHPFGEIRTLNSVRELHAQIIKMPKKRNLVTMDGSMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVKIPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIFLRDGGRFHHFMNGECSCKDRW* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0214 945 Pfam DYW family of nucleic acid deaminases 853 945 IPR032867 GO:0008270
Gso16g0214 945 Gene3D Tetratricopeptide repeat domain 595 691 IPR011990 GO:0005515
Gso16g0214 945 Gene3D Tetratricopeptide repeat domain 283 416 IPR011990 GO:0005515
Gso16g0214 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Gso16g0214 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Gso16g0214 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Gso16g0214 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Gso16g0214 945 TIGRFAM PPR: pentatricopeptide repeat domain 641 674 IPR002885 -
Gso16g0214 945 TIGRFAM PPR: pentatricopeptide repeat domain 470 502 IPR002885 -
Gso16g0214 945 TIGRFAM PPR: pentatricopeptide repeat domain 539 572 IPR002885 -
Gso16g0214 945 TIGRFAM PPR: pentatricopeptide repeat domain 504 538 IPR002885 -
Gso16g0214 945 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Gso16g0214 945 TIGRFAM PPR: pentatricopeptide repeat domain 368 402 IPR002885 -
Gso16g0214 945 TIGRFAM PPR: pentatricopeptide repeat domain 675 709 IPR002885 -
Gso16g0214 945 Pfam PPR repeat 612 637 IPR002885 -
Gso16g0214 945 Pfam PPR repeat 233 259 IPR002885 -
Gso16g0214 945 Pfam PPR repeat 712 733 IPR002885 -
Gso16g0214 945 Pfam PPR repeat family 641 684 IPR002885 -
Gso16g0214 945 Pfam PPR repeat family 466 505 IPR002885 -
Gso16g0214 945 Pfam PPR repeat family 331 376 IPR002885 -
Gso16g0214 945 Pfam PPR repeat family 536 584 IPR002885 -
Gso16g0214 945 Gene3D Tetratricopeptide repeat domain 417 528 IPR011990 GO:0005515
Gso16g0214 945 Gene3D Tetratricopeptide repeat domain 692 860 IPR011990 GO:0005515
Gso16g0214 945 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 228 933 - -
Gso16g0214 945 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 144 225 - -
Gso16g0214 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Gso16g0214 945 Pfam E motif 755 817 IPR046848 -
Gso16g0214 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Gso16g0214 945 Gene3D Tetratricopeptide repeat domain 529 594 IPR011990 GO:0005515
Gso16g0214 945 Gene3D Tetratricopeptide repeat domain 140 282 IPR011990 GO:0005515
Gso16g0214 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Gso16g0214 945 PANTHER OS05G0586900 PROTEIN 144 225 - -
Gso16g0214 945 PANTHER OS05G0586900 PROTEIN 228 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0214 Gso-Chr16 2518130 2521850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0214 143 945 Glycoside Hydrolase AT3G49170 29.108 3.00e-122 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0214 - - gmx:100801069 1919.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0506 7 5118962 5122651 Gso16g0214 16 2518130 2521850 GST