Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0203 ATGTTCCTCCTCACACGCCTTACCCGCCAAAACCCCTCACGCGCCACGCTCCTCACGCGCCACCTCTCCTCAGCCGCGTCCAAACTCCACTCCAATTACACCTTCAAACCACCGTCTTCTCTCCCTCCCCAGCCCCAATGCTCCAATTTCCCTCCCTCCAAGCCCAACCAGAAAAAGCCCAAGCCCAGGTATCGGCCCCCCTCCTCCCTCGACCAGGCCGGCCGCAAGCCCGTCCGGTCCAACGACCTGCCCTTCGACTTCCGGTTCAGCTACACGGAGAGCAGTGCCAAGGTGCGACCCATCGGGCTCAGGGAGCCCAAGTACTCCCCCTTCGGACCGGGCCGGGTCGACCGCAAGTGGACCGGAGTGTGCGCCCCCGCGGTGGACCCCACGGTGGAGAGCCTGGAGGGTCCGGAGGACCCTAAGTTGGAGGAACAGAGGAAGAAGAAGAGAGAGATGATTCAAGGAAAACCGCTTTCTAGTGAAGAGAGAAAGACATTGGTTTCGCAATTTGAGAGAAGCAAAACTAATAAACATGTCAATCTCGGGAGGGATGGTCTAACTCACAACATGCTGAATGTTATTCATAATCATTGGAAATTTGCTGAAGCAGTTAGAATCAAATGCATGGGTGTTCCAACTATGGACATGAATAATATTTGTACCCAGCTTGAGGACAAAACATTTGGGAAGGTCATTTTCAGACATGGGGGTACACTTATACTATACAGAGGCAGAAATTATAATCCGAAAAAGAGGCCTGTAATTCCTGTCATGTTGTGGAAGCCCCATGAACCTGTATATCCCAGACTGATTAAGACAACAATTGATGGCTTAAGTATTAAGGAAACAAAAGAAATGCGGAAGAGAGGACTATCTGTTCCTGCTTTAACAAAACTTGCCAAAAATGGTTATTATGCTTTTTTGGTACCCATGGTCAGAGATGCTTTCCTCTCCTGCGAATTGGTTCGGATAGACTGCGAGGGACTTGAGAGGAAAGATTACAAGAAAATAGGCTGCAAACTCAGGGACATGGTCCCCTGTATTCTGGTGACTTTTGAGAATGAACAAATTGTGGTTTGGAGGGGGAAGGATTATAAGCCCCCGAAGGATGGATACTTTCTCAAAGATCGAGAATCGTTTGACGACGATGATGACTTTTGTGTGGGAAAAGAGCAACAGGCTATGTAA 1191 0.4954 MFLLTRLTRQNPSRATLLTRHLSSAASKLHSNYTFKPPSSLPPQPQCSNFPPSKPNQKKPKPRYRPPSSLDQAGRKPVRSNDLPFDFRFSYTESSAKVRPIGLREPKYSPFGPGRVDRKWTGVCAPAVDPTVESLEGPEDPKLEEQRKKKREMIQGKPLSSEERKTLVSQFERSKTNKHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDKTFGKVIFRHGGTLILYRGRNYNPKKRPVIPVMLWKPHEPVYPRLIKTTIDGLSIKETKEMRKRGLSVPALTKLAKNGYYAFLVPMVRDAFLSCELVRIDCEGLERKDYKKIGCKLRDMVPCILVTFENEQIVVWRGKDYKPPKDGYFLKDRESFDDDDDFCVGKEQQAM* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0203 396 Pfam CRS1 / YhbY (CRM) domain 159 244 IPR001890 GO:0003723
Gso16g0203 396 Pfam CRS1 / YhbY (CRM) domain 280 362 IPR001890 GO:0003723
Gso16g0203 396 ProSiteProfiles CRM domain profile. 157 255 IPR001890 GO:0003723
Gso16g0203 396 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 5 394 IPR044599 GO:0000373
Gso16g0203 396 ProSiteProfiles CRM domain profile. 277 373 IPR001890 GO:0003723
Gso16g0203 396 SMART CRS1_YhbY_2 159 244 IPR001890 GO:0003723
Gso16g0203 396 SMART CRS1_YhbY_2 279 362 IPR001890 GO:0003723
Gso16g0203 396 PANTHER CRS2-ASSOCIATED FACTOR 1, MITOCHONDRIAL 5 394 - -
Gso16g0203 396 Gene3D - 279 373 IPR035920 -
Gso16g0203 396 MobiDBLite consensus disorder prediction 135 159 - -
Gso16g0203 396 MobiDBLite consensus disorder prediction 29 81 - -
Gso16g0203 396 SUPERFAMILY YhbY-like 279 369 IPR035920 -
Gso16g0203 396 MobiDBLite consensus disorder prediction 131 163 - -
Gso16g0203 396 Gene3D - 158 255 IPR035920 -
Gso16g0203 396 SUPERFAMILY YhbY-like 158 254 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0203 Gso-Chr16 2377568 2382266 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0203 - - gmx:100789954 768.459