Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0189 ATGCCACCTCAAATGCAGCCCTTCGCCGATTTCCTCCGCGCTCCGCCGGCGGCGGCGGCGGCGAAGCCCATCGTGAAGAAAACGCTAATAGTAGAAGAATCTTCATTAGACAACCCGGATCTGGGCCCATTCCTTCTGAAAATGGCCCGAGAAACAATAGCTTCGGGTGAAAGCCCGGTAAAGGCCCTAGACTTGGCAATTCGGGCCTCAAAGTCCTTCGAGCGGTGTGCAGGTCCGGGCCTGGAACTTGCCACGTGTCTCCACGTGGTTGCTGCGATCTACAGCAGTTTGGGGCGGTTGGATGAGGCGGTTGAGGCCTTGGAACGGTCCATTTTGTTGCTGGATAGCGAAACCGGGTCGGGTCATATCATGGCCCAGTTTTCCGGGTACATGCAACTTGGGGATACTTATTCCATGATTGGACAGTTGGATAGATCCATTAAGTGTTACGAGTCGGGTTTGAAGATCCAAATGGATGTGTTGGGTGAGTCCGACCCGAGAGTTGCTGAGACTTGTAGGTACCTAGCTGAAGCTCATGTTCAAGCCATGCAATTTGACCAGGCAGAGAACTTCTGCAAGAAGACCCTTGAAATTCACAGGGAGCATTGCTCTCCTGCTTCCCTTACCGAAGCAGCCGACAGGCGTCTAATGGCCCTTATATGCGAGGCAAAGGGAGATTATGAACTGGCACTTGAGCACCTTGTCCTAGCTAGCATGTCAATGATAGCAAATGCACAAGATAACGAGGTTGCAGCTATTGATGTTAGCATTGGAGACATTTACTTGTCACTCTGTCGTTTTGATGAGGCTGTTTTCGCCTATCAGAAAGCACTAACAGTGTTCAAATCCACCAAAGGTGAAAGCCACAGTTGTGTGGCATTAGTGTACATTCGCCTTGCTGACCTTTACTACAGGACAGGAAAATTAAGAGAGTCAAAATCGTATTGCGAAAATGCCTTAAGAATATACAGCAAGCCTGTGGCTGGAACAACCGCCGGGGAGATTGCGAGTGGTTTGACCGAAATCTCTGCCATCTATGAAGCTCTAAACGAGCCTGAAGAGGCGCTGAAGCTGCTACAGAAGGCGGTGAAGTTGTTGGAGGATATCCCTGGACAATATAGGACAGTAGCAGGAATAGAAGCCCAAATGGGAGTGATGTTCTACATGGTTGGGAAGTATATGGATGCTTGGAAGTCTTTTGAGAATGCTATCACCAAGCTGAGAGCAAGCGGGGAGAAGAAATCTGCCTTTTTTGGAGTTGTATTGAACCAGATGGGGCTGGCATGTGTGCAACTGTACAAAATAGGGGATGCTGCCAAACATTTTGAAGAAGCGAAAGAGATATTGGAGAGAGAGTGTGGAACATATCATTCTGACACTCTTGGGGTGTACAGCAATCTTGCAGCAACTTATGATGCCTTGGGGAGAGTTGAGGATGCCATTGAGATATTAGAATACATACTAAAGATGAGGGAAGAAAAACTTGGAACTGCAAATCCAGATGTTGATGATGAAAAGAAACGGCTGTTTGAGCTTTTGAAAGAAGCAGGAAGAGTTCGGAATAGAAAGGGGAAAAAATCACTTGAAAACCTTATAGATTCCAATTCCTTAAAGATGAAGAAGGAAGGAAAAAAGAGATGGGCTGCTTTTGGCTTGAGAACTTAA 1665 0.4727 MPPQMQPFADFLRAPPAAAAAKPIVKKTLIVEESSLDNPDLGPFLLKMARETIASGESPVKALDLAIRASKSFERCAGPGLELATCLHVVAAIYSSLGRLDEAVEALERSILLLDSETGSGHIMAQFSGYMQLGDTYSMIGQLDRSIKCYESGLKIQMDVLGESDPRVAETCRYLAEAHVQAMQFDQAENFCKKTLEIHREHCSPASLTEAADRRLMALICEAKGDYELALEHLVLASMSMIANAQDNEVAAIDVSIGDIYLSLCRFDEAVFAYQKALTVFKSTKGESHSCVALVYIRLADLYYRTGKLRESKSYCENALRIYSKPVAGTTAGEIASGLTEISAIYEALNEPEEALKLLQKAVKLLEDIPGQYRTVAGIEAQMGVMFYMVGKYMDAWKSFENAITKLRASGEKKSAFFGVVLNQMGLACVQLYKIGDAAKHFEEAKEILERECGTYHSDTLGVYSNLAATYDALGRVEDAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKEAGRVRNRKGKKSLENLIDSNSLKMKKEGKKRWAAFGLRT* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0189 554 Gene3D Tetratricopeptide repeat domain 414 532 IPR011990 GO:0005515
Gso16g0189 554 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 21 554 - -
Gso16g0189 554 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 21 554 - -
Gso16g0189 554 SUPERFAMILY TPR-like 130 491 IPR011990 GO:0005515
Gso16g0189 554 SMART tpr_5 377 410 IPR019734 GO:0005515
Gso16g0189 554 SMART tpr_5 127 160 IPR019734 GO:0005515
Gso16g0189 554 SMART tpr_5 169 202 IPR019734 GO:0005515
Gso16g0189 554 SMART tpr_5 461 494 IPR019734 GO:0005515
Gso16g0189 554 SMART tpr_5 336 369 IPR019734 GO:0005515
Gso16g0189 554 SMART tpr_5 419 452 IPR019734 GO:0005515
Gso16g0189 554 SMART tpr_5 293 326 IPR019734 GO:0005515
Gso16g0189 554 SMART tpr_5 251 284 IPR019734 GO:0005515
Gso16g0189 554 SMART tpr_5 84 117 IPR019734 GO:0005515
Gso16g0189 554 ProSiteProfiles TPR repeat profile. 251 284 IPR019734 GO:0005515
Gso16g0189 554 Pfam Tetratricopeptide repeat 421 493 - -
Gso16g0189 554 Pfam Tetratricopeptide repeat 250 324 - -
Gso16g0189 554 Gene3D Tetratricopeptide repeat domain 30 237 IPR011990 GO:0005515
Gso16g0189 554 SUPERFAMILY TPR-like 216 324 IPR011990 GO:0005515
Gso16g0189 554 Gene3D Tetratricopeptide repeat domain 238 413 IPR011990 GO:0005515
Gso16g0189 554 ProSiteProfiles TPR repeat profile. 336 369 IPR019734 GO:0005515
Gso16g0189 554 SUPERFAMILY TPR-like 62 156 IPR011990 GO:0005515
Gso16g0189 554 Pfam MalT-like TPR region 88 237 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0189 Gso-Chr16 2177620 2182335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0189 90 296 Glycosyltransferase AT3G04240 23.853 8.35e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0189 - - gmx:100794697 1048.11