Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0179 ATGAGGCAAGTGAAGCAAATTCATGGTTACACTCTAAGAAATGGCATAGACCAGACCAAAATCCTTATTGAGAAGCTACTTGAAATCCCAAACCTTCACTATGCACACAAGGTGTTGCACCATTCCCCAAAGCCAACCCTTTTCCTCTACAACAAGCTCATTCAAGCCTACTCCTCCCACCCTCAACACCAACACCAATGTTTCTCCCTTTACTCCCAAATGCTCCTTCATAGCTTCCTACCAAACCAACACACTTTCAACTTTCTCTTCTCTGCATGCACCTCCCTTTCTTCCCCATCCCTTGGCCAAATGCTCCATACCCATTTCATCAAATCAGGCTTTGAACCTGACCTCTTTGCAGCCACTGCTTTGCTTGACATGTATACAAAAGTTGGTACTTTGGAGCTGGCACGCAAACTGTTTGATCAAATGCCTGTGAGAGGGGTGCCCACGTGGAATGCTATGATGGCTGGGCATGCAAGATTTGGTGATATGGATGTAGCTTTGGAATTGTTTAGATTGATGCCTTCTAGGAATGTGGTGTCATGGACCACCATGATATCAGGTTACTCGCGGAGCAAAAAGTACGGGGAGGCTTTGGGGTTGTTCCTGAGGATGGAGCAGGAGAAAGGGATGATGCCCAATGCAGTAACCTTGGCAAGCATTTTTCCAGCTTTTGCAAATCTTGGAGCACTGGAGATTGGGCAGAGGGTTGAAGCATACGCAAGGAAGAATGGGTTCTTTAAGAATTTATATGTGAGCAATGCTGTGTTGGAGATGTATGCAAAATGTGGTAAGATTGATGTTGCTTGGAAGGTGTTCAATGAGATTGGCAGCTTGAGAAACTTGTGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTCCATGGAGAATGTTGCAAGACCCTTAAGCTTTATGATCAAATGCTGGGAGAAGGAACTTCACCTGATGATGTGACATTTGTGGGGCTCCTCTTGGCATGTACTCATGGAGGCATGGTTGAAAAAGGCAGGCATATCTTCAAGTCAATGACCACATCCTTCAACATTATTCCCAAACTAGAACACTATGGATGCATGGTTGATCTCCTAGGCCGTGCCGGGCAATTGAGAGAAGCTTATGAGGTAATACAAAGAATGCCCATGAAACCAGACTCAGTGATATGGGGAGCTCTATTGGGAGCTTGCAGCTTCCATGATAATGTTGAGCTGGCTGAGATTGCAGCCGAGTCTCTATTTGCACTTGAGCCTTGGAATCCAGGAAACTATGTCATTCTTTCCAACATTTATGCATCAGCTGGCCAATGGGATGGAGTTGCAAAGCTCAGGAAAGTGATGAAGGGAAGCAAAATTACAAAGTCAGCTGGACATAGTTTCATTGAAGAGGGAGGCCAACTGCATAAGTTCATTGTGGAAGATAGATCACATCCTGAAAGCAACGAAATTTTTGCCTTGCTTGATGGAGTTTATGAAATGATAAAGCTTAATAGAAGTGCATTTGAATGTCATTTGGATCTTGATTTGAGCAACTATTCATAG 1539 0.4418 MRQVKQIHGYTLRNGIDQTKILIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGGQLHKFIVEDRSHPESNEIFALLDGVYEMIKLNRSAFECHLDLDLSNYS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0179 512 Gene3D Tetratricopeptide repeat domain 282 481 IPR011990 GO:0005515
Gso16g0179 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Gso16g0179 512 TIGRFAM PPR: pentatricopeptide repeat domain 357 380 IPR002885 -
Gso16g0179 512 TIGRFAM PPR: pentatricopeptide repeat domain 181 216 IPR002885 -
Gso16g0179 512 TIGRFAM PPR: pentatricopeptide repeat domain 151 181 IPR002885 -
Gso16g0179 512 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Gso16g0179 512 Pfam PPR repeat 122 149 IPR002885 -
Gso16g0179 512 Pfam PPR repeat 356 381 IPR002885 -
Gso16g0179 512 Pfam PPR repeat 255 277 IPR002885 -
Gso16g0179 512 Pfam PPR repeat 285 313 IPR002885 -
Gso16g0179 512 PANTHER OS06G0125600 PROTEIN 2 461 - -
Gso16g0179 512 Gene3D Tetratricopeptide repeat domain 135 245 IPR011990 GO:0005515
Gso16g0179 512 Gene3D Tetratricopeptide repeat domain 13 134 IPR011990 GO:0005515
Gso16g0179 512 Pfam PPR repeat family 178 227 IPR002885 -
Gso16g0179 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 214 IPR002885 -
Gso16g0179 512 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 461 - -
Gso16g0179 512 Pfam E motif 399 461 IPR046848 -
Gso16g0179 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0179 Gso-Chr16 2060986 2063151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0179 5 494 Glycoside Hydrolase AT3G49170 33.602 7.66e-93 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0179 - - gmx:100790321 1043.88