Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0057 ATGTTTCTCCACATTGTTTTCCTCCTTTCCCTTCTCTCATCCACTTCCCATGCCACTGTCCAAGACTTCTGTGTGGCAGACCTTAAGGGTGCAGACACCCCTTCAGGCTACCCCTGCAAGCCACCTGCAAATGTAACTTCAGATGACTTTGTGTACACAGGCTTAGCTGAAGCTGCAAATGTCACAAACATAATCAATGCTGCTGTGACCCCAGCTTTTGTTGCTCAATTCCCAGGTCTCAATGGCCTTGACCTCTCTGCAGCAAGATTAGACCTTGGTCCTGGTGGTGTTATCCCACTCCACACTCACCCTGGTGCCAATGAACTACTCATTGTTCTCCAAGGTCACATCCTTGCTGGATTCATATCTTCAGGTAACATAGTTTATCAGAAGGTGCTAAAAAAGGGAGAGCTCATGGTTTTCCCACAAGGGTTGTTGCACTTCCAAATTGCTGTTGGTAAGAGAAAGGCCCTTGCTTTTCCTGTCTTCAGCAGTGCTTTTCCTGGCCTTCAAATCCTTGACTTTGCACTCTTTGCCAGCAATTTCTCCACTCCTTTGGTGACACAGACCACTTTCCTTGACCCTGCCATAGTGAAGAAGCTTAAGGGTGTTCTTGGGGGAAGTGGCTAG 630 0.4762 MFLHIVFLLSLLSSTSHATVQDFCVADLKGADTPSGYPCKPPANVTSDDFVYTGLAEAANVTNIINAAVTPAFVAQFPGLNGLDLSAARLDLGPGGVIPLHTHPGANELLIVLQGHILAGFISSGNIVYQKVLKKGELMVFPQGLLHFQIAVGKRKALAFPVFSSAFPGLQILDFALFASNFSTPLVTQTTFLDPAIVKKLKGVLGGSG* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0057 209 CDD cupin_OxOx 20 205 - -
Gso16g0057 209 Pfam Cupin 54 195 IPR006045 -
Gso16g0057 209 SUPERFAMILY RmlC-like cupins 18 202 IPR011051 -
Gso16g0057 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 4 205 - -
Gso16g0057 209 SMART Cupin_1_3 53 199 IPR006045 -
Gso16g0057 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Gso16g0057 209 Gene3D Jelly Rolls 16 208 IPR014710 -
Gso16g0057 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Gso16g0057 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Gso16g0057 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Gso16g0057 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0057 Gso-Chr16 664882 665823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0057 17 209 Miscellaneous Gene Families AT1G72610 67.876 8.42e-90 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0057 - - gmx:100816355 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0341 7 3215625 3216546 Gso16g0057 16 664882 665823 GST