Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0029 ATGGCATCTCATTTACTCAATCACTCCTCCAAGATGAGAAATGCTTCCAAGTTGCTGCACCACGAGCGCGCTCTTTTGGTTCGTTGGTTTTCCGGCGATGCTCATTCATCCCTCAACCGGAACCGCGATGTGTGGAAAACTCAATTCCACGAGTCTTCAGCAAGAAGCAGTGTCTTTGAACCAGCCTCCTGCTTTAATAAACATTCATTTGGCATGCAGAAGAGAAACATCTTCATGGCTACCATTAAAAGGGGTTCCATTATCGGGTCTGAGTTCAATGGAGAGATTTCACGAAGTTTGCAGGTACTGTCGAGGAGATGCTATGCGTCAGCCTCAGATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAGAATCTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCCACTGTTGAAATGGAATGTATGGAGGAAGGTTTTCTGGCCAAGATAATCCGTGGGGATGGGGCAAAAGAAATTAAAGTTGGTGAGGTAATTGCCGTAACTGTTGAAGATGAAGGGGATATTGCAAAATTCAAAGATTACCAACCTTCAGCATCTGAACCAAGTGAACCCCCTGCCAAAGAAACATCTGCCCCACCTCCACCAAAGAAAGAAGAGGTGGTAGAGGAGCCTGCCCGAGAACCTGAGCCAAAGGTTTCTAAACCCAGTGCACCACCTTCATCTGGAGATCGCACATTTGCTAGTCCCCTTGCTCGAAAATTGGCTGAAGAGAAAAATGTACCTCTCTCTAGCATTAAAGGAACAGGACCTGAAGGGCTCATTGTCAAGGCCGACATTGATGATTACTTGGCTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAGGTCACAGCTTCACGGTTATTATTATCAAAACAAACTATCCCTCATTACTATTTAACAGTAGATACATGCGTTGATAAACTCATGAGCTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCTCGCATATCAGTTAATGACCTTGTAATCAAGGCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAGTATCATAATGTGAATATTAATGTTGCTGTGCAGACAGATAATGGGCTCTTTGTTCCAGTTGTCAGGGATGCAGACAAGAAAGGCCTCTCTAAAATAGGGGAAGAGGTCAAACAATTGGCAAAGAAAGCCAAAGAAAACAGCTTGAAACCCCAAGAATATGAGGGAGGTACATTTACAGTGACTAACCTGGGAGGGCCATTTGGTGTCAAACAATTCTGTGCAATCATCAATCCTCCTCAGGCAGGCATTCTTGCCGTTGGATCTGCTGAGAGGAGGGTCGTTCCGGGTTCGGGTGCTGAAGAATTCAAGTTTGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCCAGAGACCATGTTGTTGTAA 1644 0.4507 MASHLLNHSSKMRNASKLLHHERALLVRWFSGDAHSSLNRNRDVWKTQFHESSARSSVFEPASCFNKHSFGMQKRNIFMATIKRGSIIGSEFNGEISRSLQVLSRRCYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDRISPGEVLCEVETDKATVEMECMEEGFLAKIIRGDGAKEIKVGEVIAVTVEDEGDIAKFKDYQPSASEPSEPPAKETSAPPPPKKEEVVEEPAREPEPKVSKPSAPPSSGDRTFASPLARKLAEEKNVPLSSIKGTGPEGLIVKADIDDYLASGAKEVSASSKAKVAADAALDYTDIPVSQIRKVTASRLLLSKQTIPHYYLTVDTCVDKLMSLRTQLNSLQEASGGSRISVNDLVIKAAALALRKVPQCNSSWANDYIRQYHNVNINVAVQTDNGLFVPVVRDADKKGLSKIGEEVKQLAKKAKENSLKPQEYEGGTFTVTNLGGPFGVKQFCAIINPPQAGILAVGSAERRVVPGSGAEEFKFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPETMLL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0029 547 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 250 295 IPR036625 GO:0016746
Gso16g0029 547 Pfam Biotin-requiring enzyme 119 191 IPR000089 -
Gso16g0029 547 SUPERFAMILY Single hybrid motif 116 211 IPR011053 -
Gso16g0029 547 MobiDBLite consensus disorder prediction 205 257 - -
Gso16g0029 547 SUPERFAMILY CoA-dependent acyltransferases 316 547 - -
Gso16g0029 547 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL 46 547 - -
Gso16g0029 547 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 316 547 IPR001078 GO:0016746
Gso16g0029 547 MobiDBLite consensus disorder prediction 223 241 - -
Gso16g0029 547 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 142 171 IPR003016 -
Gso16g0029 547 ProSiteProfiles Biotinyl/lipoyl domain profile. 117 193 IPR000089 -
Gso16g0029 547 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 257 294 IPR004167 GO:0016746
Gso16g0029 547 PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 46 547 - -
Gso16g0029 547 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 119 547 IPR006257 GO:0004742|GO:0006090|GO:0045254
Gso16g0029 547 CDD lipoyl_domain 118 191 - -
Gso16g0029 547 Gene3D - 301 545 IPR023213 -
Gso16g0029 547 Gene3D - 112 217 - -
Gso16g0029 547 Pfam e3 binding domain 257 290 IPR004167 GO:0016746
Gso16g0029 547 Gene3D - 245 298 IPR036625 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0029 Gso-Chr16 262437 269641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0029 2 547 Acyl Lipid Metabolism Gene Families AT1G54220 66.971 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0029 K00627 - gmx:100778218 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0307 7 2818784 2825290 Gso16g0029 16 262437 269641 GST