Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1588 ATGGATCACCACGAGGATGAAAGTAACAGCAAACAAGACGATGAGGAAGCTGTTGCTCGCCTTGAGGAAATAAAAAAATCTATTGAGGCGAAGCTGGCTTTACGGCAAAGCAATTTGAATCCAGAAAGGCCTGATTCAGGATTTTTAAGGACATTGGATTCTAGCATTAAGCGCAACACTGCTGTTATTAAGAAACTGAAGCAGATTAATGAAGAGCAGCGTGAAGCTCTGATGGACGAGTTGCGAAGTGTCAACTTAAGCAAATTTGTCAGTGAAGCTGTGGCTGCTATATGTGATGCCAAGCTTAGAAGTTCTGATATACAAGCTGCAGTTCAGATCTGTTCTTTGCTTCATCAAAGGTACAAGGACTTTGCACCAAGCCTGGTTCAAGGGCTTCTCAAAGTCTTCTCTCCTGGAAAACCTGGTGATGAATCAGATACAGACAGAAATTTGAAGGCAATGAAGAAGCGCAGCTCTCTAAAGCTTATATTGGAACTTTTTTTTGTTGGAGTTATTGAAGATGGTGGGATTTTTATCAATATCATAAAAGATCTTAGCAGTGGGGAACAGCTAAAAGATCGGGATGCTGCACAAACAAGTTTGACCCTTCTTTCGAGTTTTGCTCGCCAAGGGAGAATTTTTCTAGGACTTTCTGTTAGTGGGCCGGAAATTCATGAGGAGTTTTTTAAAGGCCTTAACATCACAGCAGATCAGAAGAAAGTTTTCCGGAAAGCATGCTATTCCTTTTATGATGCTGCAGCTGAACTACTTCAGTCTGAGCATTCTTCACTTCGCTTAATGGAGCATGAAAATTCTAAGATTTTGAATGCAAAAGGAGAGCTCAGTGATGAAAATATTGCTTCATATGAAAAGCTTCGTAAATCCTATGACCATCTGTACCGTAATGTTGCATCATTAGCAGAAGCACTTGATATGCAGCCTCCTGTAATGCCAGAGGATGGCCACACAACTAGGGTTACCAGTGGTGAGGATGGGGTTTCTTCTGCTTCTGGTAAAGATTCTTCTGTTGTTGAACCCATATGGGATGATGAAGATACAAGGACTTTCTATGAATGTTTACCTGATCTTAGAGCTTTTGTTCCTGCTGTGCTTTTGGGAGAAACGGAGCCAAAAAGCAGCGAGCAATCTGCGAAGAATCAAGACCTAACAACTGAAATATTACCTGAATCAGACAAAGGTCAACAGACCACTCATGAAAGTGGAGAGGTCTCTACAGAGTCTAATGCTTTGCCAGAGGCAGAAAGCACAGAAAGAGTGAAGGATAAGGAGGAAAAAGACAAGTCTAACGAATTGGACAGAGAGAAGGAAAAAGAAAAAGATAATGACAAAAAGGGAGAAAATGAAAAAGACAAACTCAGAAGTCTTGAAGGGACAAATTTGGATGCTCTACTGCAGAGGCTTCCGGGTTGTGTGAGCCGAGACCTTATTGATCAATTAACTGTGGAGTTCTGTTATCTAAATTCAAAATCAAATCGGAAAAAGCTTGTGAGGGCTTTGTTCAATGTACCAAGGACATCTCTGGAGCTGTTACCATATTATTCCCGCATGGTTGCCACACTCTCAACTTCTATGAAGGATGTCTGCTCCATTCTTTTGCAGATGTTGGAGGAGGAATTCAACTTCTTAATAAATAAAAAGGATCAGATGAACATTGAGTCCAAGATAAGGAACATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTGCCCCTCCTGGCCTAGTCTTCAGCTGTTTGAAGGCCTGTTTAGATGATTTTACACATCATAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGGTCTCCAGAAACTACTATACGCATGGCTAACATGTTGGAGATATTGATGCGCTTGAAAAATGTAAAAAACTTGGATCCGAGACATAGCACTTTGGTGGAGAATGCATACTACCTCTGCAAACCACCAGAAAGATCCGCACGAGTAGCCAAAGTTCGTCCTCCATTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGATAAGTCTACCATTGAGCATGTGCTGAGGCAACTCCGTAAATTACCATGGAATGAATGTGAACCATATCTTTTGAAATGCTTCATGAAGGTCTACAAAGGAAAATATGGTCAGATCCACCTGATTGCATCTCTTGCTGCTGGATTAAGTCGCTATCATGATGAGTTTGCTGTAGCTATCGTTGATGAGGTTCTGGAGGAGATTAGAGTTGGGCTTGAGTTAAATGACTATGGGATGCAGCAAAGACGCATTGCTTACATGCGATTCTTAGGGGAGCTATACAACTATGAACATGTAGACTCATCTGTTATTTTTGAGACACTATATCTCATTCTCATCCATGGCCATGGGACATCAGAGCAAGATGTACTGGATCCACCTGAAGATTGTTTTCGCATGAGGTTGATCATTACTCTGCTTGAAACTTGTGGGCATTACTTTGATCGTGGCTCTTCTAAGAGGAAACTTGATCGATTCCTAATACACTTCCAGAGGTATATTTTAAGCAAAGGGACACTGCCTCTGGACATTGAATTTGACTTACAGGATCTGTTTGTGGACTTGCGTCCCAATATGGTTCGTTACACTTCTATCGAGGAAGTGAATGCAGCTCTAGTAGAACTCGAGGAACATGATCGGATTGTTTCTGCTGATAAGGTCAGCAGTGAAAAACATTCTGGCACTGAGAAGCCTTTAATTAGGACCACTTCCACTACTGCAGTGGTTGGCAATGGACAAAGCATTGATAATGGTACGGAAGAAAATGAAGTGCAAGATGATAATGACAGTGAGACTGATTCAGGGAGTGACACAATTGATGTGGAGGGACATGATGAAGAGTTGGATGAGGAGAATCATGATGATGGGTGTGAGACTGAGGATGATGATGATGATGATGATGATGGGCCTGGACCAGCTTCTGACGAGGAGGATGAAGTCCATGTGAGACAAAAAGTGACCGAGGTGGACCCTCTGGAAGAAGCCAATTTCGATCAGGAGCTCAAGGCTGTAGTACAGGAGAGTATGGAACAGCGAAGGCAGGAGCTACGAGGTCGTCCTACATTGAACATGATGATTCCAATGAATGTATTTGAGGGATCTGCCAAGGATCACCATGGGAGGGGAGTTGGTGGGGAAAGTGGTGATGAGGCCCTGGATGAGGATACTGGAGGAAACAAAGAGGTTCAGGTGAGAGTTCTTGTGAAGCGGGGAAACAAGCAGCAAACAAAGCAGATGTTCATCCCACGGAATTCCTCACTGGTGCAGAGTACAAAACAGAAAGAAGCAGCGGAGCTTCAAGAGAAAGAAGACATCAAGAGGCTTGTCTTGGAGTATAATGATAGAGAAGAGGAGGAGCATAATGGATTAGGGACCCAGCCAACAAACTGGATGCAGAGTGTAGGTTACAAAGGTGGTGGCCGTGGCAGCACTTTGGAAGGAAACAGTGGCAGGGGTAGTGGATCAAGACATCGGCATCATAATTATTCTGGCAGTGGAATCTATTACAGTAGAAGAAAGTGA 3564 0.4256 MDHHEDESNSKQDDEEAVARLEEIKKSIEAKLALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQREALMDELRSVNLSKFVSEAVAAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLVQGLLKVFSPGKPGDESDTDRNLKAMKKRSSLKLILELFFVGVIEDGGIFINIIKDLSSGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKKVFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNVASLAEALDMQPPVMPEDGHTTRVTSGEDGVSSASGKDSSVVEPIWDDEDTRTFYECLPDLRAFVPAVLLGETEPKSSEQSAKNQDLTTEILPESDKGQQTTHESGEVSTESNALPEAESTERVKDKEEKDKSNELDREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTSMKDVCSILLQMLEEEFNFLINKKDQMNIESKIRNIRFIGELCKFKIAPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILIHGHGTSEQDVLDPPEDCFRMRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGTLPLDIEFDLQDLFVDLRPNMVRYTSIEEVNAALVELEEHDRIVSADKVSSEKHSGTEKPLIRTTSTTAVVGNGQSIDNGTEENEVQDDNDSETDSGSDTIDVEGHDEELDEENHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKVTEVDPLEEANFDQELKAVVQESMEQRRQELRGRPTLNMMIPMNVFEGSAKDHHGRGVGGESGDEALDEDTGGNKEVQVRVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEEHNGLGTQPTNWMQSVGYKGGGRGSTLEGNSGRGSGSRHRHHNYSGSGIYYSRRK* 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1588 1187 SUPERFAMILY ARM repeat 666 891 IPR016024 -
Gso15g1588 1187 MobiDBLite consensus disorder prediction 912 933 - -
Gso15g1588 1187 PANTHER - 3 1186 - -
Gso15g1588 1187 MobiDBLite consensus disorder prediction 327 341 - -
Gso15g1588 1187 SUPERFAMILY ARM repeat 465 659 IPR016024 -
Gso15g1588 1187 Coils Coil 11 31 - -
Gso15g1588 1187 MobiDBLite consensus disorder prediction 376 419 - -
Gso15g1588 1187 MobiDBLite consensus disorder prediction 989 1011 - -
Gso15g1588 1187 Coils Coil 428 448 - -
Gso15g1588 1187 MobiDBLite consensus disorder prediction 1089 1108 - -
Gso15g1588 1187 MobiDBLite consensus disorder prediction 1048 1074 - -
Gso15g1588 1187 MobiDBLite consensus disorder prediction 376 459 - -
Gso15g1588 1187 SUPERFAMILY ARM repeat 72 188 IPR016024 -
Gso15g1588 1187 MobiDBLite consensus disorder prediction 934 988 - -
Gso15g1588 1187 MobiDBLite consensus disorder prediction 1130 1187 - -
Gso15g1588 1187 Pfam MIF4G domain 673 866 IPR003890 GO:0003723|GO:0005515
Gso15g1588 1187 Pfam MIF4G domain 471 655 IPR003890 GO:0003723|GO:0005515
Gso15g1588 1187 MobiDBLite consensus disorder prediction 311 343 - -
Gso15g1588 1187 Pfam Up-frameshift suppressor 2 989 1125 IPR007193 -
Gso15g1588 1187 SMART if4_15 468 656 IPR003890 GO:0003723|GO:0005515
Gso15g1588 1187 SMART if4_15 671 872 IPR003890 GO:0003723|GO:0005515
Gso15g1588 1187 SMART if4_15 56 278 IPR003890 GO:0003723|GO:0005515
Gso15g1588 1187 MobiDBLite consensus disorder prediction 1089 1114 - -
Gso15g1588 1187 Gene3D - 8 318 - -
Gso15g1588 1187 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 3 1186 IPR039762 GO:0000184
Gso15g1588 1187 MobiDBLite consensus disorder prediction 898 1076 - -
Gso15g1588 1187 Gene3D - 429 664 - -
Gso15g1588 1187 MobiDBLite consensus disorder prediction 420 459 - -
Gso15g1588 1187 Gene3D - 666 896 - -
Gso15g1588 1187 Coils Coil 539 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1588 Gso-Chr15 22174257 22193020 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1588 K14327 - gmx:100795746 2261.88