Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1460 ATGGCGTCCGTTTACATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGACCAGCTTCCGAGGGACGCCTCCGACATCCTCGACATCCTCAAGGCCGAACAAGCCCCTCTCGATCTCTGGCTCATCATTGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATATCGCCAGATTTTGGAGGAAGGATCCAGTCCAGAAATTGATGAGTATTATGCTGATGTCAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGAGCTTACTACAGCTACCTTGGAAAAATAGAGACAAAACAAAGAGAAAAGGAGGAGCATTTCATTTTGGCAACACAGTATTACAATAAAGCATCTAGGATTGACATGCACGAGCCCTCCACTTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGTGAAGTAGAACAGGCGTCTGCTGCATTTAAGATTGTGTTAGATGGAGACCATGATAATGTTCCTGCTCTTTTGGGCCAGGCATGTGTTGAGTTCAACCGCGGCCGATTTTCTGATTCACTTGAGTTGTATAAGAGAGTATTGCAAGTGTATCCCAATTGCCCAGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAGAAAGCTCAACAGGCATTTGAGCGTGTTTTACAGCTAGATCCAGAAAATGTTGAGTCTCTCATTGCCCTTGCAATAATGGATTTGCGTACTAATGAAGCTACTGGAATCAGGACGGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGACAACATTTTTTAGTAGAGCAACTGACTGAAACTGCATTGGCCGTTACTAATCATGGCCCAACAAAGTCTCACTCTTACTACAATTTAGCACGCTCATACCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCTGTCAAGGAAGTAAACAAACCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTGCAGATAAAGTTGGGAGATTTTAAAAGTGCACTCTCAAACTTTGAAAAGGTCTTGGAAGTGTACCCAGATAATTGTGAGACATTGAAAGCACTTGGGCATATATATGTTCAACTTGGTCAAACTGACAAGGGCCAGGACTTTATTAGGAAAGCCACAAAGATTGATCCCCGTGATGCCCAGGCGTTTCTTGAGCTGGGAGAATTGTTAATTCTTTCTGACACAGGAGCTGCACTGGATGCATTCAAAACTGCTCATACTCTATTTAAGAAGGGAGGTCAAGAAGTACCAATTGAATTACTCAATAATATTGGCGTGCTTCAGTTTGAAAGGGGGGAATTTGAGCTTGCTCGACAAACATTTAAGGAGGCACTAGGTGATGGTGTTTGGCTATCTTTCATCAACGAGGAAAATAAGTCTTCCATTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAATTATTTCGTGACCTTGAAAGCAATGGTCACCATGTGGAAGTACCTTGGGATAAAGTCACTGTACTATTTAACTTGGCTAGGTTACTTGAGCAGTTATATGATTCTGGAACTGCAAGCATATTCTATCGCCTTATCTTGTTCAAGTATCCAGACTATATTGATGCATATCTGAGGCTAGCTGCAATTGCAAAAGCTCGGAACAACATTCTGTTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATAACAAGTGTCCCAATGCATTATCTATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTAAAGGCAAAAGAAACTCTCCGCACAGCTAGTGATGCAACTGATGGCAAGGACTCATATGCTACTCTTTCTCTGGGAAACTGGAATTACTTTGCAGCAGTTCGCAATGAGAAGAGAAATCCAAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAAGAACTTTGTACCAGAGTTCTGATTCAGCATTCTTCTAATTTATATGCTGCCAATGGTGCTGCGGTAGTCTTAGCAGAAAAGGGCCATTTTGATGTGTCAAAGGATATCTTTACACAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCACATGTTTATTTTGCTCAGGGGAATTTTACTTTGGCTGTGAAAATGTATCAAAACTGCTTGCGGAAGTTTTATCATAACACAGACTCTCAAATACTTCTATATTTAGCTCGTACACATTACGAGGCTGAACAGTGGCAAGACTGTATAAAAACTCTACTGAGGGCCATACATTTGGCACCCTCAAACTATACCTTAAGGTTTGATGCAGGGGTTGCAATGCAAAAGTTTTCAGCATCAACACTACAAAAAGCAAAGAGGACTGCAGATGAGGTAAGAGCAACTGTTGCTGAGCTTCAAAATGCTGTTCGTGTATTTAGTCAGTTGTCTGCTGCTTCCAATCTACATATTCACGGGTTTGATGAGAAGAAAATTGACACTCATGTTGGATACTGCAACCACTTACTTTCGGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCATGAAGAGCAGCAAGTACGGCAAAGACAAGAACTTGCTCGTCAGGTTGCATTGGCTGAGGAAGCCCGGCGAAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGAGAAAACAAGAAGACGAGCTAAAGCGTGTGCAACAACAGGAGGAACATTTTAGGCGTGTTAAGGAGCAATGGAAGAGCAGCAGTCTTTCAAAACGGAGAGAAAGATCAGACGATGAAGAGGGAGGGACTGGTGAGAAGAAGAGAAAAAAAGGTGGAAAACGGAGAAAAAAGGATAAGCACTCTAAATTGCGCTATGACGCAGAGGAACCAGAAGATGATTTGATGGATGAACAGGGAATGGAGGATGAAGAAGCTGATATAAACTACAGAGAGGAGCCCCAAACTCAGATGAATGATGATGCTGAGGAAAATGCTCAGGGTCTTCTTGCAGCGGCTGGGCTTGAAGATTCTGATGCAGATGAGGAAACAGCTGCACCTTCCTCAAGCATAGCCCGACGAAGGCAAGCATTATCGGAATCTGATGATGACGAACCATTATTACAAAGGCAGTCAAGTCCAGTAAGACAAAACTCTGCTGATATGCAGTTGAGTGATGGAGAAATAAGGGATGGGGATAAGACAAATGGAGATGATGGCAATGATGAGGAGAAACAATATTGA 3267 0.4264 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYRQILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSDSLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIMDLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALGDGVWLSFINEENKSSIDAATSTLQFKDMQLFRDLESNGHHVEVPWDKVTVLFNLARLLEQLYDSGTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLGELELKNDDWVKAKETLRTASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELCTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFRRVKEQWKSSSLSKRRERSDDEEGGTGEKKRKKGGKRRKKDKHSKLRYDAEEPEDDLMDEQGMEDEEADINYREEPQTQMNDDAEENAQGLLAAAGLEDSDADEETAAPSSSIARRRQALSESDDDEPLLQRQSSPVRQNSADMQLSDGEIRDGDKTNGDDGNDEEKQY* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1460 1088 Coils Coil 801 821 - -
Gso15g1460 1088 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Gso15g1460 1088 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1045 IPR031101 GO:0006355|GO:0016570
Gso15g1460 1088 MobiDBLite consensus disorder prediction 972 990 - -
Gso15g1460 1088 MobiDBLite consensus disorder prediction 1051 1065 - -
Gso15g1460 1088 Gene3D Tetratricopeptide repeat domain 709 830 IPR011990 GO:0005515
Gso15g1460 1088 Coils Coil 855 922 - -
Gso15g1460 1088 SUPERFAMILY TPR-like 106 295 IPR011990 GO:0005515
Gso15g1460 1088 SUPERFAMILY TPR-like 303 475 IPR011990 GO:0005515
Gso15g1460 1088 Pfam Tetratricopeptide repeat 200 230 IPR001440 GO:0005515
Gso15g1460 1088 MobiDBLite consensus disorder prediction 1067 1088 - -
Gso15g1460 1088 Pfam Tetratricopeptide repeat 354 412 - -
Gso15g1460 1088 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Gso15g1460 1088 Pfam Tetratricopeptide repeat 134 194 - -
Gso15g1460 1088 Pfam Tetratricopeptide repeat 718 781 - -
Gso15g1460 1088 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Gso15g1460 1088 SUPERFAMILY TPR-like 522 793 IPR011990 GO:0005515
Gso15g1460 1088 Gene3D Tetratricopeptide repeat domain 518 708 IPR011990 GO:0005515
Gso15g1460 1088 Gene3D Tetratricopeptide repeat domain 299 477 IPR011990 GO:0005515
Gso15g1460 1088 MobiDBLite consensus disorder prediction 895 1088 - -
Gso15g1460 1088 SMART tpr_5 128 161 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 749 782 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 524 557 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 162 195 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 197 230 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 305 338 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 558 591 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 448 488 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 592 625 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 713 746 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 376 409 IPR019734 GO:0005515
Gso15g1460 1088 SMART tpr_5 342 375 IPR019734 GO:0005515
Gso15g1460 1088 Gene3D Tetratricopeptide repeat domain 9 298 IPR011990 GO:0005515
Gso15g1460 1088 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Gso15g1460 1088 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
Gso15g1460 1088 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Gso15g1460 1088 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Gso15g1460 1088 MobiDBLite consensus disorder prediction 895 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1460 Gso-Chr15 16760529 16785794 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1460 K15176 - gmx:100804954 2063.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1460 15 16760529 16785794 Gso9g0578 9 6819455 6835577 GST