Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1353 ATGTTGTTCTACCCAAGAACCTTGTCCCTCCAAACCTCACTCAAGCGCGGTTTCACCCCCACTCCAAAACCCATTAATTGCTTCCTCCTCTTCCTCTTCCGCCACCGCAAGTTCAACCTAATCACCCACTTCTTCTCTCAGTTGAAATCCAACAACGCCCCTACCAACCGCAGAACCCTCTCCCTCCTCACATGGTCACTCCTCAAATCACACAAATTCGAAGAAGCAGAGCAATTCATGCACTCCCACACCCACATCACCCACTCCTCGATGTGGGACTCCCTCATCCAAGGCCTCCACGACCCCGAGAAAGCACTCTCCGTTCTGCAACGCTGCGTGAGAGACCGTGGTGTGTTACCTTCTTCTTCCACTTTTTGTTTGGTAGTTCACAAATTGAGCTCAAAGGGGTTGATGGGTAGGGCCATTGAGGTGCTGGAGTTGATGGCTGGGGATGGAGTTAGGTACCCTTTTGATGATTTTGTTTGTAGTTCTGTGATTTCCGGGTTTTGTAGGATTGGAAAACCGGAACTTGCGTTGGGGTTTTTCAAGAATGTTACGGATTGTGGAGGGTTGAGGCCAAATGTGGTGACTTGCACTGCTCTTGTGGGGGCTCTTTGTAAGATGGGGAGGGTTGGGGAGGTGTGTGGTTTGGTTCAGTGGATGGAGAGGGAAGGGTTGGGTTTGGATGTTGTTTTGTATAGTGCTTGGGCTTGTGGGTATGTTGAGGAGAGGGTTTTGGGGGAGGTTTTTGGGAGGATGAGGGAAATGGTGGAGAAGGGTATAGGCCATGATTTTGTGAGCTATACTGTGCTTGTGGATGGGTTTTCCAAGCTTGGTGATGTGGAGAAGTCGTTTACTTTCTTGGCGAAGATGATAAAAGAAGGACATAGACCTAATAAGGTTACATATAGTGCAATCATGTCTGCTTATTGTAAGAAGGGCAAGGTGGAGGAGGCATTTGGTGTTTTTGAGAGCATGAAAGATTTGGGAATTGATCTGGATGAATATGTGTTTGTGATTTTGATTGACGGGTTTGGGAGGATAGGGGATTTCGATAAAGTGTTTTGTCTGTTTGATGAAATGGAGAGGAGTGGGATTAGTCCTAGTGTTGTTGCATACAATGCTGTTATGAATGGTTTGTCCAAGCATGGGCGGACGTCTGAGGCGGATGAGTTATTGAAAAATGTTGCTGCAGATGTGATTACGTACAGCACGTTGCTACATGGATACATGGAAGAGGAGAACATTCCGGGGATTTTGCAAACGAAGAGGCGACTGGAAGAATCTGGCATTTCTATGGATGTTGTGATGTGTAATGTGCTGATCAGAGCCCTGTTTATGATGGGGGCTTTTGAAGATGTTTATGCACTTTACAAAGGAATGCCTGAAATGGATCTGATTCCGAATTCGGTGACTTACTGCACAATGATTGATGGGTATTGCAAGGTAGGTAGAATTGAAGAGGCACTTGAGGTATTTGATGAATTTAGAAAGACTTTGATCTCGTCACTTGCCTGCTACAATAGTATTATTAATGGCCTTTGCAAGAATGGTATGACAGAAATGGCCATTGAGGCTTTGCTTGAACTCAATCATGAAGGTCTTGAGTTGGATATAGGTACATTTAGGATGTTAACGAAGACAATTTTTGAAGAAAACAATACAAAAAAGGCTTTAGATTTAGTTTACAGAATGGAGGGTTTGGGACCAGACATATATAGCTCAGTATGTAATGATTCCATCTTTTTATTATGTCAAAGAGGATTACTTGATGATGCAAATCATATGTGGATGATGATGAAAAAGAAAGGCCTATCTGTCACATGCAATTCTTATTATTCTATTTTGAGAGGGCATCTTAATAATGGGAATAGGGAGCAAATTTATCCCCTTTTGAATAGCTTCCTGAAAGATTATGGTCTAGTTGAACCAATGGTACAAAAGATACTTGCATGCTACCTCTGTCTGAAAGATGTCAATGGTGCCATTCGATTTCTTGGAAAAACAATGGATAATTCTTCAACAGTCACTTTTCTTACCTCTATTCTCAAGATTCTCATAAAGGAGGGTAGAGCTTTAGATGCGTATAGGCTTGTCACGGAGACTCAAGATAATTTACCAGTCATGTATGCTGATTATGCCATTGTGATTGATGGCTTGTGCAAGGGAGGATATCTCAATAAAGCATTGGATCTTTGTGCCTTTGTTGAAAAGAAGGGGATGAATTTGAACATAGTCATATATAATTCAATAATAAATGGATTGTGCCATGAAGGACGTCTTATTGAAGCATTTCGGCTATTGGATTCAATAGAGAAACTTAATTTGGTACCCTCTGAAATAACTTATGCTACAGTTATTTATGCTCTATGTAGGGAGGGATTTTTGCTAGATGCAGAGCATGTTTTTAGTAAAATGGTCCTCAAGGGCTTTCAGCCAAAAGTACAAGTTTACAATTCATTACTTGATGGAATTTCTAAGTTTGGTCAACTAGAAAAGGCATTTGAGCTTCTAAATGATATGGAGACAAAATATATCGAGCCTGACAGTCTGACTATTAGTGCTGTAATTAATTGTTATTGCCAAAAGGGTGACATGCATGGAGCTCTTGAATTTTATTATAAGTTCAAGAGGAAGGATATGTCACCTGATTTTTTTGGGTTCTTGTATTTGATAAGAGGTCTATGTACCAAGGGAAGGATGGAAGAAGCCAGGAGTGTCTTGAGAGAAATGCTCCAGTCCAAGAATGTGGTAGAGTTAATTAACATAGTCAACAAGGAGGTTGATACTGAATCAATAAGTGATTTCCTTGGCACTTTGTGTGAGCAAGGAAGGGTTCAAGAAGCTGTTACAGTTCTCAATGAAATTGTATGTATACTTTTTCCTGTTCAAAGGTTGTCCACTTATAATCAAGGATCCCTTAAACAACAGAAGATTTATGAATGGAAGGATGAACCAAAATCTTCAAGCATTGTACCTTCCTCTTGCAAAAGTGGTTTGAATCTTGGATCCTGTGATGACAAAGATGTAAGGAATCTTTCAACAGATAATGGTGGTTATATGACAAGATCCCAGCTGCATGGATTTGACTTCTATTATTCTAGAATTGCTGCACTTTGTGCCAAAGGGGAACTGCAGAAAGCAAATCAATCAGTAAAAGAATTTCTTTCTGACCTGACAGAGTCTATGAACTGA 3195 0.4103 MLFYPRTLSLQTSLKRGFTPTPKPINCFLLFLFRHRKFNLITHFFSQLKSNNAPTNRRTLSLLTWSLLKSHKFEEAEQFMHSHTHITHSSMWDSLIQGLHDPEKALSVLQRCVRDRGVLPSSSTFCLVVHKLSSKGLMGRAIEVLELMAGDGVRYPFDDFVCSSVISGFCRIGKPELALGFFKNVTDCGGLRPNVVTCTALVGALCKMGRVGEVCGLVQWMEREGLGLDVVLYSAWACGYVEERVLGEVFGRMREMVEKGIGHDFVSYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAIMSAYCKKGKVEEAFGVFESMKDLGIDLDEYVFVILIDGFGRIGDFDKVFCLFDEMERSGISPSVVAYNAVMNGLSKHGRTSEADELLKNVAADVITYSTLLHGYMEEENIPGILQTKRRLEESGISMDVVMCNVLIRALFMMGAFEDVYALYKGMPEMDLIPNSVTYCTMIDGYCKVGRIEEALEVFDEFRKTLISSLACYNSIINGLCKNGMTEMAIEALLELNHEGLELDIGTFRMLTKTIFEENNTKKALDLVYRMEGLGPDIYSSVCNDSIFLLCQRGLLDDANHMWMMMKKKGLSVTCNSYYSILRGHLNNGNREQIYPLLNSFLKDYGLVEPMVQKILACYLCLKDVNGAIRFLGKTMDNSSTVTFLTSILKILIKEGRALDAYRLVTETQDNLPVMYADYAIVIDGLCKGGYLNKALDLCAFVEKKGMNLNIVIYNSIINGLCHEGRLIEAFRLLDSIEKLNLVPSEITYATVIYALCREGFLLDAEHVFSKMVLKGFQPKVQVYNSLLDGISKFGQLEKAFELLNDMETKYIEPDSLTISAVINCYCQKGDMHGALEFYYKFKRKDMSPDFFGFLYLIRGLCTKGRMEEARSVLREMLQSKNVVELINIVNKEVDTESISDFLGTLCEQGRVQEAVTVLNEIVCILFPVQRLSTYNQGSLKQQKIYEWKDEPKSSSIVPSSCKSGLNLGSCDDKDVRNLSTDNGGYMTRSQLHGFDFYYSRIAALCAKGELQKANQSVKEFLSDLTESMN* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 399 IPR002885 -
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Gso15g1353 1064 Gene3D Tetratricopeptide repeat domain 795 1020 IPR011990 GO:0005515
Gso15g1353 1064 Gene3D Tetratricopeptide repeat domain 355 549 IPR011990 GO:0005515
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 849 883 IPR002885 -
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 193 IPR002885 -
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat family 744 792 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat family 368 410 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat family 813 862 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat family 298 345 IPR002885 -
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Gso15g1353 1064 PANTHER FERTILITY RESTORER-LIKE 737 1061 - -
Gso15g1353 1064 PANTHER FERTILITY RESTORER-LIKE 533 640 - -
Gso15g1353 1064 PANTHER FERTILITY RESTORER-LIKE 680 741 - -
Gso15g1353 1064 PANTHER FERTILITY RESTORER-LIKE 45 549 - -
Gso15g1353 1064 Pfam PPR repeat 713 740 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat 266 295 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat 436 464 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat 583 605 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat 161 185 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat 196 225 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat 506 534 IPR002885 -
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 884 918 IPR002885 -
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 779 813 IPR002885 -
Gso15g1353 1064 Gene3D Tetratricopeptide repeat domain 240 354 IPR011990 GO:0005515
Gso15g1353 1064 Gene3D Tetratricopeptide repeat domain 97 189 IPR011990 GO:0005515
Gso15g1353 1064 Gene3D Tetratricopeptide repeat domain 664 794 IPR011990 GO:0005515
Gso15g1353 1064 Gene3D Tetratricopeptide repeat domain 550 647 IPR011990 GO:0005515
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat 466 495 IPR002885 -
Gso15g1353 1064 Pfam PPR repeat 880 911 IPR002885 -
Gso15g1353 1064 PANTHER ATPASE EXPRESSION PROTEIN 3 680 741 - -
Gso15g1353 1064 PANTHER ATPASE EXPRESSION PROTEIN 3 737 1061 - -
Gso15g1353 1064 PANTHER ATPASE EXPRESSION PROTEIN 3 45 549 - -
Gso15g1353 1064 PANTHER ATPASE EXPRESSION PROTEIN 3 533 640 - -
Gso15g1353 1064 Coils Coil 1056 1064 - -
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 814 848 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 506 538 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 746 779 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 817 849 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 891 915 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 371 394 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 852 884 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 471 498 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 781 813 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Gso15g1353 1064 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Gso15g1353 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 744 778 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1353 Gso-Chr15 14321392 14328414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1353 578 984 Glycosyltransferase AT1G05670 24.777 3.89e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1353 - K17964 gmx:100783405 2104.72