Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1283 ATGCCACAACCAAAAGAGCTTCCAGGGTTTTATTATGACCCTGAGAAGAACAGGTATTTTCCCATCAAAGGCCCCATTCCTGGCTCTTCTTCTAAGCCCAAGACCCCTGCTCTTAACTCACCCCAAACCTCTTCCAATCAGGAAAGTGGTGGGAGTTGTTGTAGGAAGCTTAGAAACAGAACCCTGTCTAAGCTGCTTCAGGCTAGGGAGTTGGATGGTCACAGTGTCGTCATCTCTCGGTATTGCAGAAGTAACTTCACTGAGGAATTCCGGAAAATGCAAGCATCTAGACCTGTGGTCTGGAAGTATCGGGGAACTGATGGGATGCGTATTACTGCTTTGGAACACTTGCGCGTTGATGTGCAGACATCCGAGGGGCAAACTGAAACTGATGTTTTGTTGACGGGCAGCACAAATGGCTCGATGAGTTTTTCTCAAGTTGGAGGGGTTGGGCGTAATTATGATGGTGGGACAAAATGGAGGGCAGATTGTGTGAAGAATTATGTTAAAGGGAGAACAGATGAGCATAATGAGGTGCTTAAGCCGGTTTTCAAACCTAATCGAGCTGCACTGCTTATGTCCTCCAGAATATCTAGTATAAGATTGGGTCCTAAGTGCTCTTCTCACGCTGTCAATGATGGTCATATTGTTGGACGTGCATTATTTACTACTTTGGGATCAGAGACATCAGGTGGATCAGTTTATACTCTTGATCTTGTTGAACCATTAAATCTTGGACCAGGTATACTGAACACATGGAGCGGACTAGAGGAAATTGCTTCTTTCAGGTGTACCATTTGGACAGCAGAATATGATTATAATAGACATCGGGCTGTAATTGGTACAAATTTGGGAGGTGCTTCAGTGGATCTGGAAACTGGGACGATATCATGGTTTTTACATTGTAAAAGTGATGTTTTTGCGCAACAGATTGTTAGTTCAGGAAATGTGATTTTATGTGGGCTAAGAAATGGAGCAATTGTCACTGTAGATTCTCGTGAGAGTCGAGAAAGCCTTTCTGGTAGACTTATTACCCATCGGATACCATATACATCTTCAGACAAGAAAGTTGGAGGTTCTAATAAAGAATGGTTCAAGCTCAAAGGAGACATATATCCTTCTCATACCATTAGGATGCCTTCATCTATTTCCTGTTTGGCGTCACTTCAGTTTGATGATCAGTACTTTTTGGCAAGCTCAATGGATGGATCGATGAGACTTTATGATCTTCGTCTACTTCAGAGGGGTGCTGTTCAATGTTATGAAGGGCATGTGAATTCTCATACTCGTATACAGATTGGTGTTGATCCATCTGAGAGATTTGTTATGTCAGGTGGAGAGGATTGCAAGCTAAGGTTATGGAGTATCAAGTCTGGTGAACTGCTTTTTGAGGACAAGTTCTCTGATTCAGTTATCTCCACTGTGTGCTATAAAACATATGGACATAGTTTTAAAGCAGAAGAGGAAAACCAATACAAGCGTGACTCGTCTCAGGGTGCATGGCTTGGATCACTTGAAGGACTGTTTTATATGTGCTGGTTATGA 1545 0.4272 MPQPKELPGFYYDPEKNRYFPIKGPIPGSSSKPKTPALNSPQTSSNQESGGSCCRKLRNRTLSKLLQARELDGHSVVISRYCRSNFTEEFRKMQASRPVVWKYRGTDGMRITALEHLRVDVQTSEGQTETDVLLTGSTNGSMSFSQVGGVGRNYDGGTKWRADCVKNYVKGRTDEHNEVLKPVFKPNRAALLMSSRISSIRLGPKCSSHAVNDGHIVGRALFTTLGSETSGGSVYTLDLVEPLNLGPGILNTWSGLEEIASFRCTIWTAEYDYNRHRAVIGTNLGGASVDLETGTISWFLHCKSDVFAQQIVSSGNVILCGLRNGAIVTVDSRESRESLSGRLITHRIPYTSSDKKVGGSNKEWFKLKGDIYPSHTIRMPSSISCLASLQFDDQYFLASSMDGSMRLYDLRLLQRGAVQCYEGHVNSHTRIQIGVDPSERFVMSGGEDCKLRLWSIKSGELLFEDKFSDSVISTVCYKTYGHSFKAEEENQYKRDSSQGAWLGSLEGLFYMCWL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1283 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 433 464 IPR001680 GO:0005515
Gso15g1283 514 MobiDBLite consensus disorder prediction 32 53 - -
Gso15g1283 514 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 512 - -
Gso15g1283 514 Pfam WD domain, G-beta repeat 381 409 IPR001680 GO:0005515
Gso15g1283 514 Pfam WD domain, G-beta repeat 419 455 IPR001680 GO:0005515
Gso15g1283 514 MobiDBLite consensus disorder prediction 1 53 - -
Gso15g1283 514 PANTHER KATANIN P80 SUBUNIT 12 512 - -
Gso15g1283 514 Gene3D - 289 483 IPR015943 GO:0005515
Gso15g1283 514 SUPERFAMILY WD40 repeat-like 232 476 IPR036322 GO:0005515
Gso15g1283 514 SMART WD40_4 370 409 IPR001680 GO:0005515
Gso15g1283 514 SMART WD40_4 414 455 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1283 Gso-Chr15 13127248 13134624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1283 394 484 Miscellaneous Gene Families AT5G08390 27.473 8.91e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1283 K11799 - gmx:100798753 1038.48