Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1208 ATGGGTGTTGTTACTCAGATTTATGATACCCCTGCTGCTGTGCCTCCTACTAGGCTTTTCAAAGCCATGACGTTAGATTTCCATAACCTCTTCCCAAAGCTTGTGGATAGCATCCACAGCATTGTTTTCACACAAGGAAATGGTGGTCCGGGCACCATCAAGAAAATCAGCACCATTGAAGGTGGCAAAACCAAGTATGTGCTGCACAGAGTTGATGCAATTGATGAGGCTAACTTTGTATATAACTTCAGCATAATTGAGGGCACTGCCTTGGTTGACACGTTGGAGAAGGTCTCATTCGAGAGCCAATTGGTGGAAGGCCCAAATGGAGGATCCATTAGGAAGGTACGTGTTCAATTTTTCACCAAAGGGGATGCTACGCTTAGTGAGGAGGAGCTCAATGCCAACCAAGCCAAGATCCAAGGGCTTGTAAAACTTGTTGAAGGGTACCTTTTGGCAAATCCTGATTATTGA 474 0.4515 MGVVTQIYDTPAAVPPTRLFKAMTLDFHNLFPKLVDSIHSIVFTQGNGGPGTIKKISTIEGGKTKYVLHRVDAIDEANFVYNFSIIEGTALVDTLEKVSFESQLVEGPNGGSIRKVRVQFFTKGDATLSEEELNANQAKIQGLVKLVEGYLLANPDY* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1208 157 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1208 157 PANTHER - 1 157 - -
Gso15g1208 157 Pfam Pathogenesis-related protein Bet v 1 family 3 154 IPR000916 GO:0006952
Gso15g1208 157 PANTHER PATHOGENESIS-RELATED PROTEIN 10 1 157 - -
Gso15g1208 157 Gene3D - 2 157 IPR023393 -
Gso15g1208 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1208 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1208 157 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1208 157 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1208 157 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1208 157 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1208 157 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1208 157 CDD Bet_v1-like 5 151 - -
Gso15g1208 157 SUPERFAMILY Bet v1-like 2 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1208 Gso-Chr15 12067643 12068769 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1208 - - gmx:100810115 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1208 15 12067643 12068769 Gso7g2057 7 44535163 44536135 PCT
Gso15g1208 15 12067643 12068769 Gso17g0243 17 2210152 2211130 PCT