Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0279 ATGCATCATATGGCGCTTCTACTTGTCGCTCTCTTGGCTCTTGTTACTACATTACCATCGGTTACTGTTGGAGAAGTGCTTTCACCCATTCTCGACGTTGCTTCACTGAACCGAACCAGTTTTCCCAAGGGCTTCATTTTTGGGGCAGGATCCGCATCGTATCAGTACGAAGGTGGGGCAAACGAAGGTGGCAAAGGACCAAGTATATGGGATACCTTCACCCACAAATATCCAGATAAAATTGTGGATAGAAGCAATGGAGATGTCGCAAATGACCAATATCACCACTATAAGGAAGATGTTGGGATCATGAAGTATATGAATTTGGATGCTTATAGATTCTCCATCTCTTGGTCAAGAATTCTTCCAAAAGGAAAGCTAAATGGGGGCATAAATCAAGAAGGAGTCAAATATTACAACAACCTCATCAACGAACTAATAGCTAACGGCTTACAACCATTTGTGACCCTTTTTCATTGGGATCTTCCCCAAGCTTTGGAAGATGAATACGGCGGCTTCTTAAATCCACGCATTATAAATGATTTTCAAGACTACGCGGAACTTTGTTTTAAGGAATTTGGAGATAGGGTGAAGTATTGGGTTACTTTAAACCAACCATATACTTATAGTACGGGTGGCTATGCGAATGGGGTAAAAGCACCAGGTCGATGCTCTAAATGGTTGAATCCAAAATGCACTGCTGGTGATTCAGGGACAGAGCCTTATTTAGTTTCACATCACCAACTTCTTGCTCATGCAGCAGTTGTCCAAGTGTATAAGAGGAAGTATCAGGCATCTCAAAATGGTGTGATCGGCATAACCCTTGTGTCTCATTGGTTTGTGCCAATTTCAAATAACAAATTAGATCAAAATGCTGCTGAAAGAGCAATTGACTTCATGCTTGGATGGTTTTTGGAGCCACTGACAACAGGAAACTATCCCCAAAGCATGCGTTCCTTAGTTGGTAAACGATTACCAAAGTTCTCTAAACAACAAACCAAGTCAATACTCGGTTCATTTGATTTTATTGGATTAAACTACTACACCTCTAACTATGCTATCCATGAACCTCAACTAAGGAATGCTAAACCCAATTACCTCACCGATTTTCAAGCGAAACTCACGACTCAACGCAATGGAATTCCCATAGGTTCAAATGCAGCATCAAGTTGGTTATATGTTTATCCTAAAGGAATTCAAGAATTATTGCTCTACGTCAAGAAAAAGTATAACAATCCTTTGATTTACATCACCGAAAATGGAATTGACGAGTTCAATGATCCAACGTTATCAATTGAGGAAGTCCTTATAGATACATATAGAATTGACTATTATTATCGTCATCTTTTTTATCTTAAATCTGCAATCAAGGATGGTGCAAATGTAAAAGGATATTTTGTCTGGTCGTTGTTGGACAATTTTGAATGGGCTAATGGTTATACAGTACGCTTTGGAATGAACTTTGTGGACTACAAAAATGGCTTAAAGAGATACCAGAAACTATCAGCAAAATGGTTCAAGAATTTTCTCAAGAAATATTAG 1542 0.3898 MHHMALLLVALLALVTTLPSVTVGEVLSPILDVASLNRTSFPKGFIFGAGSASYQYEGGANEGGKGPSIWDTFTHKYPDKIVDRSNGDVANDQYHHYKEDVGIMKYMNLDAYRFSISWSRILPKGKLNGGINQEGVKYYNNLINELIANGLQPFVTLFHWDLPQALEDEYGGFLNPRIINDFQDYAELCFKEFGDRVKYWVTLNQPYTYSTGGYANGVKAPGRCSKWLNPKCTAGDSGTEPYLVSHHQLLAHAAVVQVYKRKYQASQNGVIGITLVSHWFVPISNNKLDQNAAERAIDFMLGWFLEPLTTGNYPQSMRSLVGKRLPKFSKQQTKSILGSFDFIGLNYYTSNYAIHEPQLRNAKPNYLTDFQAKLTTQRNGIPIGSNAASSWLYVYPKGIQELLLYVKKKYNNPLIYITENGIDEFNDPTLSIEEVLIDTYRIDYYYRHLFYLKSAIKDGANVKGYFVWSLLDNFEWANGYTVRFGMNFVDYKNGLKRYQKLSAKWFKNFLKKY* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0279 513 SUPERFAMILY (Trans)glycosidases 28 511 IPR017853 -
Gso15g0279 513 PRINTS Glycosyl hydrolase family 1 signature 339 353 IPR001360 GO:0004553|GO:0005975
Gso15g0279 513 PRINTS Glycosyl hydrolase family 1 signature 415 423 IPR001360 GO:0004553|GO:0005975
Gso15g0279 513 PRINTS Glycosyl hydrolase family 1 signature 438 449 IPR001360 GO:0004553|GO:0005975
Gso15g0279 513 PRINTS Glycosyl hydrolase family 1 signature 459 476 IPR001360 GO:0004553|GO:0005975
Gso15g0279 513 PRINTS Glycosyl hydrolase family 1 signature 483 495 IPR001360 GO:0004553|GO:0005975
Gso15g0279 513 PANTHER GLYCOSYL HYDROLASE 2 512 IPR001360 GO:0004553|GO:0005975
Gso15g0279 513 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 2 512 - -
Gso15g0279 513 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 45 59 IPR033132 -
Gso15g0279 513 Coils Coil 506 513 - -
Gso15g0279 513 Gene3D Glycosidases 23 512 - -
Gso15g0279 513 Pfam Glycosyl hydrolase family 1 39 512 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0279 Gso-Chr15 2548008 2555122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0279 4 506 Glycoside Hydrolase AT5G42260 54.257 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0279 - K01188 gmx:100812431 1044.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0279 15 2548008 2555122 Gso12g0450 12 3963374 3966744 PCT
Gso15g0279 15 2548008 2555122 Gso11g1103 11 9879030 9882349 PCT