Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0127 ATGCCTCTCAGACTCGAAATCAAGCGCAAGCTTGCGCAAAGATCAGAGAGAGTGAAATGTGTGGATCTACATCCAACAGAGCCATGGATTCTGGCTAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAGTCTCAGACCATGGCAAAATCTTTTGAGGTTACCGAGTTACCAGTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAAAGTATTTGAAGCACATACTGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTATGTGCTTTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAAGGCTGGATCTGTACCCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGATTTGGAATCTTGGCTCTCCTGACCCTAATTTTACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGGCTTGAGAACACATTAAACTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGAGTTCTCGTCGGGTTGTGATTGGCTATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTGGCTAGCATGGACAACAGTGGGAAAATTATTTGGTCTAAGCATAATGAAATTCAGACTGTCAATATAAAAAGTGTAGGAGCAGATGTAGAGGTTGCTGACGGAGAAAGGTTACCTTTAGCTGTTAAGGAGTTGGGCACCTGTGATCTCTACCCCCAAAATTTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAGTACATTATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAAACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTGTATCACATTTAGATAGTGGAAGACCTGTAGATGATGAAGGTGTTGAAGATGCTTTTGAGCTCTTACATGAAATGAATGAACGTGTCAGGACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATACCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGGTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAATGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGATATTCTGCCATCAATCCCCAAAGAGCATCATAACAGTGTGGCTCATTTCCTTGAATCACGAGGGATGATAGAAGATGCTCTTGAAGTAGCTACTGACCCTGAGTACAGATTTGATCTATCAATACAGCTTGGAAAACTAGATGTTGCAAAGAGTATTGCAATAGAATTACAGAGCGAGCCTAAATGGAAGCAGTTGGGAGAATTAACTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAATGTTTGAAGTATGCAATGGATTTGAGTGGCTTGTTACTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAATCCTTGCTAAGGAGCAAGGGAAAAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGCAATCGAATTCCGGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAAGACCTCAATAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGATTGGCAGGTTGCACTAGCTGTCGAATCTAAAGCTGTGGAAACAAGGAATGTGTACCCTCCTGCGGAGCAGTACGTCAACCATGCTGACAAATCACAAATTACCCTTGTTGAAGCCTTTAGAAACATGCAGATTGAGGAAGGAGAGGAGCATCTGGAGAATGGGGACTCTACTCATGAGTTGACAGAACAAAGTGGAGAAGAGCACTACACAGAGGATCAGGAGGAACAGAATGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCAGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGACGAAGAGTGGGTGCTTGCACCACATCACTAG 2751 0.4133 MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKSSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWSKHNEIQTVNIKSVGADVEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSEGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVVSHLDSGRPVDDEGVEDAFELLHEMNERVRTGIWVGDCFIYNNTSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANDILPSIPKEHHNSVAHFLESRGMIEDALEVATDPEYRFDLSIQLGKLDVAKSIAIELQSEPKWKQLGELTMSTGKLEMAEECLKYAMDLSGLLLLYSSLGDAEGISKLAILAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAVETRNVYPPAEQYVNHADKSQITLVEAFRNMQIEEGEEHLENGDSTHELTEQSGEEHYTEDQEEQNGEEGSQEEAVVVDADSTDGAVLVNGNEADEEWVLAPHH* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0127 916 PIRSF Beta'-COP 2 889 IPR016453 -
Gso15g0127 916 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Gso15g0127 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Gso15g0127 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Gso15g0127 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Gso15g0127 916 Gene3D - 11 300 IPR015943 GO:0005515
Gso15g0127 916 SUPERFAMILY WD40 repeat-like 227 500 IPR036322 GO:0005515
Gso15g0127 916 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Gso15g0127 916 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Gso15g0127 916 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Gso15g0127 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Gso15g0127 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Gso15g0127 916 CDD WD40 17 297 - -
Gso15g0127 916 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Gso15g0127 916 Pfam WD domain, G-beta repeat 18 43 IPR001680 GO:0005515
Gso15g0127 916 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Gso15g0127 916 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Gso15g0127 916 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Gso15g0127 916 Gene3D - 590 798 - -
Gso15g0127 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Gso15g0127 916 MobiDBLite consensus disorder prediction 849 916 - -
Gso15g0127 916 SMART WD40_4 131 171 IPR001680 GO:0005515
Gso15g0127 916 SMART WD40_4 218 257 IPR001680 GO:0005515
Gso15g0127 916 SMART WD40_4 46 85 IPR001680 GO:0005515
Gso15g0127 916 SMART WD40_4 4 43 IPR001680 GO:0005515
Gso15g0127 916 SMART WD40_4 174 215 IPR001680 GO:0005515
Gso15g0127 916 SMART WD40_4 88 127 IPR001680 GO:0005515
Gso15g0127 916 MobiDBLite consensus disorder prediction 849 872 - -
Gso15g0127 916 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Gso15g0127 916 PANTHER COATOMER SUBUNIT BETA' 1 874 - -
Gso15g0127 916 PANTHER COATOMER 1 874 - -
Gso15g0127 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Gso15g0127 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0127 Gso-Chr15 1110002 1120576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0127 51 292 Miscellaneous Gene Families AT5G08390 25.000 8.98e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0127 K17302 - gmx:100804239 1847.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0127 15 1110002 1120576 Gso11g3677 11 52410049 52420471 GST
Gso15g0127 15 1110002 1120576 Gso8g1723 8 16816438 16826693 PCT
Gso8g1723 8 16816438 16826693 Gso15g0127 15 1110002 1120576 PCT