Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1081 ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGCGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGACGCACAGGATGCTATCCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCTCCTCCTTATCGTGGGCGTGAGGAGGTTCCTTATGCTAATGGAAATGGCCTTAGGGAACGACGCAGAAGCAGAAGTTGA 528 0.5265 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRSPRGRSPRHRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1081 175 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Gso14g1081 175 MobiDBLite consensus disorder prediction 94 109 - -
Gso14g1081 175 SMART rrm1_1 3 69 IPR000504 GO:0003723
Gso14g1081 175 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Gso14g1081 175 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 167 - -
Gso14g1081 175 MobiDBLite consensus disorder prediction 66 175 - -
Gso14g1081 175 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Gso14g1081 175 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 167 - -
Gso14g1081 175 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Gso14g1081 175 Gene3D - 84 131 - -
Gso14g1081 175 Gene3D - 2 69 IPR012677 -
Gso14g1081 175 CDD RRM_SRSF3_like 3 71 - -
Gso14g1081 175 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Gso14g1081 175 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Gso14g1081 175 SUPERFAMILY Retrovirus zinc finger-like domains 82 106 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1081 Gso-Chr14 19065199 19068892 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1081 K12896 - gmx:100796961 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1081 14 19065199 19068892 Gso14g1081 14 19065199 19068892 ECH
Gso14g1081 14 19065199 19068892 Gso17g1667 17 30974045 30977740 GST