Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0950 ATGTTGCCAAGAAACCCTTCATACACAAACCCAGAACCCTGCCAGCACCTTGCTGAGTACAAGCTCAAGCATGGCTTCAATGGCTACAAAGCCATCCAAAAGCTCCTCGTGACCTCTCCAATTGGGAAAACCAGTGTGAAGAAACCCAACACAAAGGTACCCAGATGCGGTTTCTGTAATGGGTGTGAAGGGAGGTTCTATCTATGCCTGATTTGTTCTTCATTTTCATGTTTGGATCACACCCTTTTGCACCCTCAATCTGAATCTGGTCATGCTGTATTTGTAGACATTGAAAGGACTGAACTTTATTGTGGAGTGTGCCGTGATCAATTGTATGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCAATGGGGGTGGCAGGTGGTGCCACTGGGAATGAAAGCATTGGCCAGAGATTGATCAAGAGGAGGAGATTGGTTTCTGGGATTGTTGGATTGGATTTGCAGAAATCTAAGTGCAGAGTTTCCACCAAAGATCTGAGGGGAAAATCGTGTTATCCTTTGGGGTTGAGGGGGTTGAACAATCTTGGTAGCACGTGCTACATGAATTCTGTGTTGCAAGTGTTGCTACATGCACCTCCTTTCAGAGACTATTTCCTGAGTGGTGGACAACGTTTGGAAGCTTGTCATCATAGAAGAGCCACGGATCTGATGTGTTGTTTGCTTTGTGATGTCAATGCTATTTTTTCGGCAGTGTATTCGGGGGATCGAAGTCCGTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCATGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCTATCCATGAGAAAGAGGGCAAAACAAGGAATGGAAGCAAAGGTAATGGAGACTGTCAATGCATTGCTCATAAGGTGTTCTATGGGTTATTGAGATCAGATGTTACCTGTATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTGTGTGGACATTTCACTTAACTTGGATACCGATGTCTCTTCAACTGAAAAGGGTAAAAAACTTACCAAACAAAATGAGGATGGCAGTATGTCTACACTTTCGGGTTGTTTAGATTTGTTCACAAGACCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCAGAATTGTCGGGAAAGGCAGGACTCGTTGAAGCAAATGTCAATTAGGAAGCTCCCATTAGTACTTAGTTTGCATGTAAAACGATTTGAGCACTCTTTTGTTAAAAAGTGTTCAAGAAAAATAGATCGCTACCTACACTTCCCATTTTCCTTAGACATGACTCCATATCTGTCCTCCTCAATCCTCAGAGCCAGATATGGGAATAGAAATTTTACTTTTGGGGGTGATCAATCAGATATGTTTTCTGAGTTCGAGATTTTTGCAGTGGTGACACATTCGGGGACACTCGAGTCTGGCCATTATGTTTCTTTTGTGCGTGTAAGGAATCAATGGTACAGATGCAATGATGCTTGGATAACTGTGGTTGATGAGGCTACAGTCAGAGCTTCACAGTGTTACATGATTTTTTATGTGCAAAAAACTCTGCACAATAAAGCAAATGAAGACCTGAGTCACGTGCCAAATTCCCCTGGAAGAGACCTATTTCTTCCTATTGCTGGATGTTGCTAG 1665 0.4318 MLPRNPSYTNPEPCQHLAEYKLKHGFNGYKAIQKLLVTSPIGKTSVKKPNTKVPRCGFCNGCEGRFYLCLICSSFSCLDHTLLHPQSESGHAVFVDIERTELYCGVCRDQLYDPDFDQVVMSKHSMGVAGGATGNESIGQRLIKRRRLVSGIVGLDLQKSKCRVSTKDLRGKSCYPLGLRGLNNLGSTCYMNSVLQVLLHAPPFRDYFLSGGQRLEACHHRRATDLMCCLLCDVNAIFSAVYSGDRSPYSPAQFLYSWWQHSANLACYEQQDAHEFFISMLDAIHEKEGKTRNGSKGNGDCQCIAHKVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDTDVSSTEKGKKLTKQNEDGSMSTLSGCLDLFTRPEKLGSDQKLYCQNCRERQDSLKQMSIRKLPLVLSLHVKRFEHSFVKKCSRKIDRYLHFPFSLDMTPYLSSSILRARYGNRNFTFGGDQSDMFSEFEIFAVVTHSGTLESGHYVSFVRVRNQWYRCNDAWITVVDEATVRASQCYMIFYVQKTLHNKANEDLSHVPNSPGRDLFLPIAGCC* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0950 554 Pfam Ubiquitin carboxyl-terminal hydrolase 181 522 IPR001394 GO:0004843|GO:0016579
Gso14g0950 554 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 180 525 IPR028889 -
Gso14g0950 554 SUPERFAMILY RING/U-box 13 118 - -
Gso14g0950 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 129 IPR013083 -
Gso14g0950 554 ProSiteProfiles Zinc finger UBP-type profile. 36 130 IPR001607 GO:0008270
Gso14g0950 554 SUPERFAMILY Cysteine proteinases 176 524 IPR038765 -
Gso14g0950 554 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Gso14g0950 554 Gene3D Cysteine proteinases 175 532 - -
Gso14g0950 554 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 550 - -
Gso14g0950 554 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 6 550 - -
Gso14g0950 554 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 181 196 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0950 Gso-Chr14 12403689 12407703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0950 181 522 Miscellaneous Gene Families AT2G24640 29.429 7.52e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0950 K11366 - gmx:100806347 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0950 14 12403689 12407703 Gso17g1843 17 37083619 37087513 GST