Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1599 ATGTCACTCGCTCAGTCTCTCCAGTCTCAACTGTGCTCCGCGGCACGGCAGAGTCCATTGCTGGCGAAGAAGCTTCACGCACAAATCATAAAAGCTGGTCTCAACCTACACGAACCCATCCCCAACACTCTCTTAAACGCATACGGCAAATGCGGTCTTATCCAAGACGCACTCCAACTGTTCGACGCATTGCCCCGCCGAGACCCCGTCGCATGGGCCTCCCTCCTCACCGCCTGCAACCTCTCCAACCGCCCTCACCGCGCCCTCTCCATCTCCCGCTCCCTTCTCTCCACCGGCTTCCACCCCGACCACTTCGTCTTCGCCTCCCTCGTCAAGGCTTGTGCTAACTTGGGTGTTCTTCACGTCAAACAAGGGAAACAAGTCCATGCTCGCTTCTTCCTATCACCCTTCTCCGATGACGACGTTGTCAAGTCTTCTTTGATTGATATGTACGCGAAATTCGGGTTGCCCGATTACGGACGTGCCGTTTTCGACTCCATTTCTTCCTTGAATTCAATTTCTTGGACTACCATGATATCCGGGTATGCGCGAAGTGGGCGAAAGTTTGAGGCTTTTCGGCTGTTTCGTCAAACGCCGTATCGGAATTTGTTTGCGTGGACTGCTTTGATTTCTGGGTTGGTGCAGAGTGGGAATGGAGTTGATGCGTTCCACTTGTTTGTTGAAATGCGGCATGAAGGGATTAGTGTAACAGACCCGTTGGTTCTTTCTAGTGTGGTTGGTGCTTGTGCTAATTTAGCTCTCTGGGAGCTAGGGAAACAGATGCACGGTGTGGTTATAACTCTTGGCTATGAGTCTTGCTTGTTTATAAGCAATGCGCTTATAGATATGTATGCCAAATGCAGTGACCTTGTTGCTGCGAAGTATATCTTCTGTGAAATGTGCAGAAAGGATGTGGTTTCTTGGACTTCAATAATTGTTGGCACTGCCCAGCATGGGCAGGCTGAGGAGGCATTGGCTTTGTATGATGAAATGGTTTTGGCTGGGATTAAGCCAAATGAAGTGACCTTTGTTGGGTTGATTCATGCTTGTAGTCATGCTGGCCTAGTTAGCAAGGGGCGTACTTTGTTCAGGACTATGGTTGAAGATCATGGGATTTCGCCCTCTCTGCAGCACTACACTTGTTTGCTGGATCTTTTTAGTAGATCAGGGCACCTTGATGAGGCTGAGAATCTCATTAGAACAATGCCAGTCAACCCTGATGAACCTACTTGGGCTGCTTTGCTCAGTTCTTGTAAGCGCCATGGTAACACCCAGATGGCAGTTAGGATTGCTGATCATCTGTTAAATTTAAAACCAGAAGATCCTTCTTCTTATATATTGTTATCTAACATATATGCTGGAGCTGGTATGTGGGAAGATGTTTCAAAAGTGAGAAAGTTGATGATGACCTTGGAAGCTAAAAAGGCACCAGGTTATAGCTGCATTGACTTGGGAAAGGGAAGCCATGTGTTTTATGCTGGAGAGACTTCTCACCCAATGAGGGATGAGATTATAGGTTTAATGAGGGAGTTAGATGAAGAGATGAGGAAAAGGGGTTATGCTCCTGATACTAGCTCAGTTTTACATGACATGGATCAACAAGAGAAGGAAAGACAACTTTTCTGGCATAGTGAGAGGTTGGCTGTGGCCTATGGGCTTCTTAAGGCTGTTCCAGGGACTGTTATACGTATAGTGAAAAATCTTCGTGTTTGTGGAGACTGTCATACTGTTCTGAAACTCATCAGCGCTATAACAAATAGGGAAATTTATGTCCGAGATGCCAAAAGATATCACCATTTTAAGGATGGGAATTGTTCTTGCAATGACTTCTGGTGA 1836 0.4679 MSLAQSLQSQLCSAARQSPLLAKKLHAQIIKAGLNLHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGIKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1599 611 Gene3D Tetratricopeptide repeat domain 126 256 IPR011990 GO:0005515
Gso13g1599 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Gso13g1599 611 Pfam PPR repeat 205 234 IPR002885 -
Gso13g1599 611 Pfam PPR repeat 173 197 IPR002885 -
Gso13g1599 611 Pfam PPR repeat 379 402 IPR002885 -
Gso13g1599 611 Pfam PPR repeat 145 167 IPR002885 -
Gso13g1599 611 Pfam PPR repeat 42 66 IPR002885 -
Gso13g1599 611 Gene3D Tetratricopeptide repeat domain 368 438 IPR011990 GO:0005515
Gso13g1599 611 Gene3D Tetratricopeptide repeat domain 262 367 IPR011990 GO:0005515
Gso13g1599 611 PANTHER OS11G0661000 PROTEIN 8 599 - -
Gso13g1599 611 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 8 599 - -
Gso13g1599 611 TIGRFAM PPR: pentatricopeptide repeat domain 341 375 IPR002885 -
Gso13g1599 611 TIGRFAM PPR: pentatricopeptide repeat domain 306 340 IPR002885 -
Gso13g1599 611 TIGRFAM PPR: pentatricopeptide repeat domain 278 306 IPR002885 -
Gso13g1599 611 TIGRFAM PPR: pentatricopeptide repeat domain 173 197 IPR002885 -
Gso13g1599 611 TIGRFAM PPR: pentatricopeptide repeat domain 205 237 IPR002885 -
Gso13g1599 611 Gene3D Tetratricopeptide repeat domain 3 121 IPR011990 GO:0005515
Gso13g1599 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 201 IPR002885 -
Gso13g1599 611 Pfam E motif 421 482 IPR046848 -
Gso13g1599 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Gso13g1599 611 Pfam DYW family of nucleic acid deaminases 519 611 IPR032867 GO:0008270
Gso13g1599 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Gso13g1599 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Gso13g1599 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 374 IPR002885 -
Gso13g1599 611 Pfam PPR repeat family 303 351 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1599 Gso-Chr13 31241002 31243352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1599 21 611 Glycoside Hydrolase AT3G49170 37.479 1.92e-133 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1599 - - gmx:100782048 1222.61