Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1593 ATGTCGGAGATGGCGAGCCCAGATCCCGAGGGACTCGACGGAGTCCGCATGACGTGGAACGTGTGGCCCCGTACGAAGGTTGAATCGAGCAAGTGCGTGATCCCTCTGGCGGCGACGGTGGCTCTGATCCGTCCCCACCCTGACATCCCCCGCCTCCAGTACGCCCCTCTCCGCTGCAAGACCTGCTCCTCCGCCCTCAACCCTTTCTCCCGCGTCGACTTCACCGCCAAGATCTGGATCTGCCCCTTCTGCTACCAGCGCAACCACTTCCCCCCTCACTACCACGCCATCTCCGAAACCAACTTCCCCGGCGAACTCTACCCCCAATACACCACCGTCGAGTACCTCCTCCCTCTCTCCAATTCCCTCAACCCTTCCCCCGTCTTCCTCTTCCTCCTCGACACCTGCCTCATCGACGAGGAGATCCACTTCCTCAAATCCGCGCTTCGTCGCGCCATTGGTCTTTTACCCGATAACGCCCTCGTAGGCTTCGTTTCATTCGGGACTCAGGTCCAGGTTTATGAATTGGGCTTCTCCGACATGTCCAAGGTTTATGTCTTCCGCGGCTCCAAGGAGATTCCCGCAGAACAGATTCTCGATCAGCTTGGTCTTTCTGCTTCCGGAAGGAGACCTCACAAGGGTGCTGCTCCCGGTGTCGCCGGTGCCGGTGGATTCCCCAATTCAGGCATCACGCGCTTCCTTTTGCCTGCTTCTGAGTGTGAATATACTCTCAATGCGCTGCTGGATGAATTGCAGATGGATCAATGGCCGGTTCCGCCTGGGCGCCGCCCTGCACGCTGCACCGGGGTTGCATTGAGTGTTGCCGCGGGGTTGCTGAGTGCTTGTAATCCTGGGACTGGTGCTAGAATCATAGCTTTGGTTGGTGGGCCATGCACGGAAGGACCTGGCGCGATTGTGTCAAAAGATCTATCTGACCCGGTGCGTTCTCATAAAGATCTTGATAAAGATGCAGCACCATTCTTCAAGAAAGCAGTCAAATTTTATGAGGGTCTCGCAAAACAGCTGGTTAGCCAGGGTCACGTTTTAGATATTTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATTAAAGTTGCGGTTGAAAGAACCGGTGGTCTTGTTGTCCTGTCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAGCGAGTTTTTGAGGATGGGGAGCAATCTCTTGGTCTTTGTTTCAATGGAACCCTGGAGATAAATTGCTCCAAGGAAATCAAAATTCAGGGAATTATTGGACCTTGCACTTCGTTGGAAAAGAAAGGGCCTTCTGTTTCTGATACTGTTATAGGAGAGGGAAACACAACAGCATGGAAGATGTGTGGCCTTGACAAGAGTACATGCTTGACTGTGATGTTTGATCTTTCATCAAGTGATCGTTCAAACACCCCTGGTGCTATCAACCCACAATTGTACCTACAGTTCCTTACAAGTTACCAGGACCCAAGTGGTCAATCAGTGCTTCGTGTCACAACAGTAACTAGAAGATGGGTAGATAGTTCTGTTAGCTCTGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCTGCAGTTGTAATGGCTAGATTTGCTTCTCTGAAAATGGAGAGTGAGGAAACATTTGATGCTACACGGTGGTTGGATCGGTTTCTCATTCGCCTCTGTTCAAAGTTTGGTGACTACCGCAAGGATGATCCATCATCTTTTACATTAAACCCATCATTTTCACTTTTCCCTCAGTTTATGTTCAATCTGCGACGCTCGCAGTTTGTACAGGTTTTTAACAACAGTCCAGACGAGACTGCATATTTCCGTATGTTGTTAAACAGGGAAAATATTAGTAATGCTGCTGTTATGATTCAGCCGTCATTGATATCATATTCATTTAATGCGCTGCCTGCACCAGCATTGTTAGATGTGGCTTCCATTGCTGCAGACAAGATTTTGTTGCTAGATTCATATTTTAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGCAACTTGGGATACCAGAATCAACCAGAACACCAGGCATTTGCACAACTATTGCGAGCTCCACATGATGATGCCCAAATGATAATTAGAGAACGTTTTCCGGTTCCTAGATTGGTAGTGTGTGACCAACATGGTTCCCAGGCTAGATTCTTGTTAGCAAAACTGAATCCTTCAGCAACGTATAACAATGCACATGAGATGGCTGCTGGTTCAGATGTAATCTTTACTGATGATGTGAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAGGTTGGCTGTCCAATCTTGA 2304 0.4865 MSEMASPDPEGLDGVRMTWNVWPRTKVESSKCVIPLAATVALIRPHPDIPRLQYAPLRCKTCSSALNPFSRVDFTAKIWICPFCYQRNHFPPHYHAISETNFPGELYPQYTTVEYLLPLSNSLNPSPVFLFLLDTCLIDEEIHFLKSALRRAIGLLPDNALVGFVSFGTQVQVYELGFSDMSKVYVFRGSKEIPAEQILDQLGLSASGRRPHKGAAPGVAGAGGFPNSGITRFLLPASECEYTLNALLDELQMDQWPVPPGRRPARCTGVALSVAAGLLSACNPGTGARIIALVGGPCTEGPGAIVSKDLSDPVRSHKDLDKDAAPFFKKAVKFYEGLAKQLVSQGHVLDIFASALDQVGVAEIKVAVERTGGLVVLSESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIIGPCTSLEKKGPSVSDTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRSNTPGAINPQLYLQFLTSYQDPSGQSVLRVTTVTRRWVDSSVSSEELVQGFDQETAAVVMARFASLKMESEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNALPAPALLDVASIAADKILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPHDDAQMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1593 767 Pfam Gelsolin repeat 635 723 IPR007123 -
Gso13g1593 767 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso13g1593 767 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 2 766 - -
Gso13g1593 767 Gene3D - 10 506 - -
Gso13g1593 767 Gene3D - 53 112 - -
Gso13g1593 767 Pfam Sec23/Sec24 beta-sandwich domain 405 509 IPR012990 -
Gso13g1593 767 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 626 766 IPR036180 -
Gso13g1593 767 SUPERFAMILY beta-sandwich domain of Sec23/24 8 522 - -
Gso13g1593 767 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 2 766 IPR037364 -
Gso13g1593 767 SUPERFAMILY Zn-finger domain of Sec23/24 47 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso13g1593 767 SUPERFAMILY vWA-like 127 395 IPR036465 -
Gso13g1593 767 SUPERFAMILY Helical domain of Sec23/24 523 625 IPR036175 GO:0006886|GO:0006888|GO:0030127
Gso13g1593 767 Pfam Sec23/Sec24 helical domain 523 619 IPR006900 GO:0006886|GO:0006888|GO:0030127
Gso13g1593 767 Gene3D von Willebrand factor, type A domain 126 403 IPR036465 -
Gso13g1593 767 Gene3D Sec23/Sec24 helical domain 520 764 - -
Gso13g1593 767 Gene3D Severin 625 729 IPR029006 -
Gso13g1593 767 CDD Sec23_C 615 735 IPR037550 GO:0030127|GO:0090114
Gso13g1593 767 Pfam Sec23/Sec24 trunk domain 126 394 IPR006896 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1593 Gso-Chr13 31183685 31190219 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1593 K14006 - gmx:100789860 1508.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0030 18 299312 305819 Gso13g1593 13 31183685 31190219 GST