Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1423 ATGGCCGATCAGTTATCCAAAGGAGAGGAATTCGAGAAGAAAGCTGAGAAGAAGCTCAGCGGTTGGGGCTTGTTTGGCTCCAAGTACGAAGATGCCGCCGATCTCTTCGATAAAGCCGCCAATTGCTTCAAGCTCGCCAAATCATGGGACAAAGCTGGAGCGACATACCTGAAATTGGCAAGTTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAGGCCCATGTTGATGCTGCACATAGCTATAAAAAAACTAATATAAACGAGTCTGTATCTTGCTTAGACCAAGCCGTAAATCTTTTCTGTGACATTGGAAGACTATCTATGGCTGCTAGATATTTAAAGGAAATTGCTGAATTGTATGAGGGTGAACAGAATATTGAGCAGGCTCTTGTTTACTATGAAAAATCAGCTGATTTTTTTCAAAATGAAGAAGTGACAACTTCTGCAAACCAATGCAAACAAAAAGTTGCCCAGTTTGCTGCTCAGCTAGAACAATATCAGAAGTCGATTGAGATTTACGAAGAGATAGCTCGCCAATCCCTCAACAATAATTTGCTGAAGTATGGAGTTAAAGGACACCTGCTTAATGCTGGCATCTGCCAACTCTGTAAAGGGGATGTTATTGCTGTAACCAATGCATTAGAACGATATCAGGAACTGGATCCAACATTTTCAGGAACACGTGAATATAGATTTTTGGCGGACATTGCTGCTGCAATTGATGAAGAAGATGTTGCGAAGTTTACTGATGTTGTCAAGGAATTTGATAGCATGACCCCTCTGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTAA 870 0.4149 MADQLSKGEEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANCFKLAKSWDKAGATYLKLASCHLKLESKHEAAQAHVDAAHSYKKTNINESVSCLDQAVNLFCDIGRLSMAARYLKEIAELYEGEQNIEQALVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVIAVTNALERYQELDPTFSGTREYRFLADIAAAIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1423 289 CDD SNAP 20 278 IPR000744 GO:0006886
Gso13g1423 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Gso13g1423 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Gso13g1423 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
Gso13g1423 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Gso13g1423 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Gso13g1423 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Gso13g1423 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Gso13g1423 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Gso13g1423 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Gso13g1423 289 Coils Coil 151 185 - -
Gso13g1423 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Gso13g1423 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1423 Gso-Chr13 29731050 29735780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1423 K15296 - gmx:100812517 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0196 18 1690128 1694760 Gso13g1423 13 29731050 29735780 GST