Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1388 ATGTTAAAAAACCAACCACAACCAGATTGGCCTGAGCCCATTGTCCGGGTTCAGTCCTTATCCGAAAACTGCGAAGATTCAATCCCTGAAAGGTACATCAAGCCTTCTACTGATAGACCATCCATAAAAAGTTGTAATTTTGATGATGCCAATATTCCAATCATCGACCTTGGGGGACTATTTGGTGCTGACCAACATGTCTCAGCCTCAATTCTTAAGCAAATCTCAGATGCTTGCAAAGAATGGGGCTTCTTCCAAGTCACTAATCATGGTGTCAACCCTGATTTGATGGACAAGGTCAGGGAAACTTGGCGTGAATTCTTTCACATGCCCATGGAGGTGAAGCAGCAATATGCAAACTCGCCAAAAACCTATGAAGGCTACGGAAGCAGACTTGGAATTGAGAAAGGTGCTATTCTTGATTGGAGTGATTACTACTTTCTTCACTATCTTCCCTTTTCACTCAAGGACTATAACAAATGGCCCGCCTCGCCTCCCTCTTGCAGGGAAGTGCTTGATGGGTATGGGAGAGAGTTAGTGAGGCTATGTGGGAGGTTGATGAAGGCTTTCTCAATAAACCTTGGATTAGATGAAAAAATCCTTCAAAATGATTTTGGAGGGGAAGACATAGGGGCATGTCTAAGAGTGAATTTTTACCCTAAATGTCCACGGCCAGAGTTGACGTTGGGTTTGTCATCACACTCAGACCCTGGAGGAATGACTATGTTGCTTCCAGATGATCAAGTTCCTGGTCTTCAAGTTCGAAAATGTGATGATTGGGTTACTGTGAAGCCTGCAAAACATGCTTTCATTGTCAATATCGGAGACCAAATCCAGGTTCTAAGCAATGCAATTTACAAGAGTGTGGAGCACAGAGTGATAGTAAATTCAGATAAAGAGAGAGTCTCTCTTGCATTTTTCTACAACCCCAAAAGTGACATACCCATAGAACCAATAAAAGAGCTTGTAACACCGAAAAGGCCCTCACTCTACCCAGCAATGACCTTCGATGAATACAGACTCTTCATTAGAATGAGAGGACCTCGAGGCAAATCTCAAATTGAATCTTTAAAGTCTCCCAGATGA 1086 0.4291 MLKNQPQPDWPEPIVRVQSLSENCEDSIPERYIKPSTDRPSIKSCNFDDANIPIIDLGGLFGADQHVSASILKQISDACKEWGFFQVTNHGVNPDLMDKVRETWREFFHMPMEVKQQYANSPKTYEGYGSRLGIEKGAILDWSDYYFLHYLPFSLKDYNKWPASPPSCREVLDGYGRELVRLCGRLMKAFSINLGLDEKILQNDFGGEDIGACLRVNFYPKCPRPELTLGLSSHSDPGGMTMLLPDDQVPGLQVRKCDDWVTVKPAKHAFIVNIGDQIQVLSNAIYKSVEHRVIVNSDKERVSLAFFYNPKSDIPIEPIKELVTPKRPSLYPAMTFDEYRLFIRMRGPRGKSQIESLKSPR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1388 361 Pfam 2OG-Fe(II) oxygenase superfamily 212 310 IPR044861 -
Gso13g1388 361 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 209 310 IPR005123 -
Gso13g1388 361 Gene3D - 12 344 IPR027443 -
Gso13g1388 361 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 11 358 - -
Gso13g1388 361 Pfam non-haem dioxygenase in morphine synthesis N-terminal 52 163 IPR026992 -
Gso13g1388 361 PRINTS Isopenicillin N synthase signature 75 92 - -
Gso13g1388 361 PRINTS Isopenicillin N synthase signature 270 296 - -
Gso13g1388 361 SUPERFAMILY Clavaminate synthase-like 14 345 - -
Gso13g1388 361 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 11 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1388 Gso-Chr13 29394737 29398436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1388 28 358 Glycosyltransferase AT5G59530 31.195 2.40e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1388 - - gmx:100801693 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0233 18 2009798 2013831 Gso13g1388 13 29394737 29398436 GST