Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1342 ATGATCGGCGTCGGAAAGATCAAGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGGTTAGTTTGAGCGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACCAAACGCAGGTCGACAATATTGGCGAGCTTGAACGAAGACTGGAGGATGCTGGATATGCGGTTGGGGCTCGAGTTCTTGAGCTGCTTTGCCACAGAGATAAGGGAAACAGAAGGGAGACACGGCTGTTGGGTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTCGTAAACAAATTCATTTCTATCCCAAAGGACATGGGAACGTTTAACTGTGGAGCATTTGTTGCTGGAATAGTACGGGGCGTTTTGGATGGTGCTGGGTTTCCAGCTGTTGTAACAGCTCATTTTGTGCCCATGGAAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGGTGTTACAAAGAGAAGCAAGATTAGGCTGA 585 0.4581 MIGVGKIKQYSNVLDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILIKFAEEVLQREARLG* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1342 194 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 188 - -
Gso13g1342 194 Gene3D Trafficking protein particle complex subunit 3 23 194 - -
Gso13g1342 194 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 23 192 IPR024096 -
Gso13g1342 194 PANTHER 41-2 PROTEIN ANTIGEN-RELATED 1 188 IPR016696 GO:0030008|GO:0048193
Gso13g1342 194 Pfam Transport protein particle (TRAPP) component 30 182 IPR007194 -
Gso13g1342 194 PIRSF TRAPP_1_Trs31 4 194 IPR016696 GO:0030008|GO:0048193
Gso13g1342 194 CDD TRAPPC5_Trs31 25 182 IPR016696 GO:0030008|GO:0048193
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1342 Gso-Chr13 28920618 28923922 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1342 K20280 - gmx:100527008 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0275 18 2425220 2429228 Gso13g1342 13 28920618 28923922 GST