Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1306 ATGGGACATCTAAAGATGCAAATGCAAACTGGTCTTAATCCCACAGAGGATGAATACATGCAATGTGATGCAGGATATCCAAACAAGACTACCATAGTATGCATGATCAATGCAGAAATTGGTGCTGTTTTGGCTGTCATGCGAAGAAATGTTAGATGGGGAGTTCATTACATGTCGGATGATGACCAATCAGAGCACTTTCTTGTTCAGTCTTTAAAGAAATTAAGGAGGCAGGTTTTCTCATGGCAAAACCAATGGCATGCCATCAACCCTGCCTTGTATCTCCAGCCCTTTTTGGATGTGATACGATCAGATGAAACTAGTGCACCTATTACTGGCGTTGCTTTGTCATCTGTTTACAAGATCTTAACTCTAGATGTGATTGATCAACACACTGTCAATGTTGGAGATACCATGCACTTGGTGGTTGAAGCTGTCACAAGTTGCAGATTTGAAGTTACTGATCCTGGATCAGAAGAAGTGGTATTAATGAAGATTTTACAAGTTCTTCTAGCATGTGTGAAAGGTAAAGCATCTGTAATGCTGAGTAACCAACACATTTGCACCATAGTGAATACTAGTTTCCGTATAGTTCATCAAGCAGGAACCAAAGGTGAGCTGTTGCAACATATAGCACGGTATACAATGCATGAACTGGTTAGGTCTATATTTTCTCACCTTCAGAATATTGACAACACAGAGTCTGCATTCATAAATGGGACAGCTACCTTAAAACAAGAGACCAATGGACTAAATAATGAGCATGCTTTGGCAAGCGGACAATTGGAAAATGGGAGGCTGAATTCTGCACGCGATGCTCAACCATTATCTACAGGCATTGCTTCCAGTACTGCAACTGATGTGACAGCAGTTGTAATTGATGAAAACACAGCTATTGCTAGCAGTGGCAATGAGATTGATCCACAGGAATTACAGCTCCTGACCGAACCATATGGGGTTCCATGTATGGTGGAAATATTTCACTTCTTGTGTTCTTTGCTGAATGTTGCTGAGCATATGGGAGTGAATCCTAGATCAAACACAATAGCATTTGATGAAGATGTTCCTCTTTTTGCTTTAAATTTGGTTAACACAGCCATAGAGTTGGGAGGGCCATCCTTTCGCTGTCACCCAAGACTCCTGAGTTTAATTCAGGATGAATTATTCCGCAATCTTATGCAATTTGGTTTATCAATGAGCCCTCTTGTACTTTCAATGGTGTGTAGCATTGTTCTCAATTTGTATCACCATCTTCGTACGGAACTGAAATTACAGCTAGAAGCATTTTTTTCTTGTGTTATTTTGAGGCTTGCACAAAGGAAATATGGGGCTTCATATCAGCAACAGGAGGTTGTGATGGAAGCACTTGTTGATTTTTGCAGGCAAAAAACATTCATGGTGGAGATGTATGCTAACTTCGACTGTGACATAAGTTGCAGTAATGTCTTTGAAGATATTGCTAACTTGTTGTCCAAAAGTGCATTTCCTGTGAACAATCCATTATCTTCCATACATGTTCTTGCCTTGGATGGTCTTATTGCTGTAATGCAGGGAATGGCCGAAAGGATTGGTAGTAGATCTTTAAGTTCAGAACAATCTCCTGTGAATTTTGTGGAGTATACTCCATTCTGGATGGAAAAGTGTGACAGTTTTGGTGACCCAAATGATTGGGTTCCTTTTGTCCGCCGAAGAAAGTACATAAAGAGAAGATTAATGATTGGAGCTGATCACTTCAATCGGGATGATAAGAAAGGTCTCGAGTTTCTCCAAGGAACACATCTTTTGCCTATCAAACTTGATCCCCATAGTGTTGCCTGCTTTTTGAGATACACTGCTGGGTTGGATAAGAATCTCATTGGCGATTTCCTTGGAAATCATGATGAACTCTGCGTTCAGGTTCTTCATGAATTTGCTAGGACATTTGATTTCCGAGATATGACCTTAGACACAGCCCTGCGTGTATTTTTGGAGACTTTTAGGCTGCCTGGAGAATCACAGAAGATACATAGGGTGCTTGAAGCTTTCTCTGAGAGATATTATGAACAATCACCACATATCCTTGCTAACAAGGATGCTGCTCTTGTGTTATCATACTCGATTATATTGCTTAATACAGATCATCATAACATGCAGGTCAAAAAGAAGATGACAAAAGAGGATTTTATCAGGAATAATAGGCATATAAATGATGGCAGTGATCTTCCTCGAGAATTCCTGTCAGAGATTTACCATTCAATTTGCAAAAATGAAATCCGTACCACTCCTGAACCAGGCTTTGGATTTCCTGAAATGACCCCAAGTCGGTGGATTTCTCTGATGCACAAGTCAAAGAAAACTGCTCCATTCATTGTATCTGATTCTAGAGCATACTTGGATTATGATATGTTTCTGTTATTGTCAGGCCCAACAATTGCTGCCATTTCTGTGGTTTTTGATAATGCTGAAAATGAAGAGGTATACCAAACATGTATGGATGGATTCTTAGCTGTTGCAAAGATATCAGCCTACTATCATCTTGAAAATGTACTTGATGATCTGGTTGTGTGCCTCTGTAAGTTCATTACCATTTTGGATCCGCTATCAGTTGAGGAATCTGTCCTGGCCTTTGGAGATGACACAAAAGCAAGAATGGCAACTGAGACAGTTTTCACTATTGCAAATAGGTATGGCGATTACATTCGCACAGGGTGGAGGAATATTCTTGAATGCATCTTAATATTTCACAAGTTAGGCCTCCTTCCTACTTGGTTGGCCAGTGATGCAGCTGACGAATCACATGTAACTACAGAAACTGGACATGGGAGGTCTAATTCAAATTCTTTATCCTCAACTCATCTTCAATATATTACTCCAAAGAGACCCTTTGGATTAATTAGCAGGTTTAGTCAACTCTTATATCTTGGGGCTGAAGAGGCAGGATCAATACCGACCGAAGAACAACTGGTTGCTCATCAGCAAGCCACACAAGCAATTCATAAGTGTCACATTGACAGCGTATTCACTGAGAGCAAATTTCTACAAGCTGAATCTCTATTGCATCTTGCAAAAGCACTCATTAGTGCTGGAGCTCAACATCTTAAAGGGAGCAGAATATCTGAGGATGAAGTCACTTCAGTTTTCTGTCTGGAGTTATTGGTGACAATCACTCTCAATAACAGGGATAGAGTTGGACTTCTTTGGAAGGATGTTTATGAACACATATCCAATATTGTTCAGTCAACTGTGATGCCTTGTGCACTGGTAGAAAGAGCTATTTTTGGACTTCTTAGAATTTGCCATCGCTTACTTCCCTACAAAGAGAACATTACTGATGAACTTTTGAGGTCCCTGCTACTTGTCTTGAAGCTTGACGCACAGGTTGCAGATGCATACTATGAGCAGATTACACAGGAAGTCAATCGCCTTGTGAAGGAAAATGCTTCACATATTAGATCTCAGTCTGGATGGCGGACAATTTCATCACTGCTTTCCATCACTGCTAGACACCTTGAAGCATCTGGGGCTGGATTTGATGCGCTGATATTCATTATGTCTGATGGAGCTCATTTGCTCCCTGCTAATTACGTTCTATGTGTAGATGTTGCGAGACAGTTTGCGGAGTCTCGTGTAGGACTGGTAGATCGGTCTATAGTTGCACTAGATCTTATGGCAGGTTCTGTTAATTGTTTAGAAAAGTGGTCTAATAATGCTAAGAAGGCAGTCAAAGAAGATGAAGTGGAAAAGATGTTGCAAGATATTGGGGAAATGTGGTTTAGGCTAGTTCAGGGACTGAGGAAAGTATGTCTGGACCAGAGAGAGGAGGTTAGAAATCATGCAGTGTTATCTTTGCAGCAGTGCTTGACAGGAGCTGTTGGGACTCACATCCCACGCAAGTTGTGGTTAACTTGTTTTGATCAAGTGATCTTCACCGTGCTGGATGACCTGCTTGAAATTGCACAAGCTCACTCTCAGAAGGACTGCAGGAACATAGAAGGAACACTTGTTATTTCCTTGACGCTCTTGTCTAAGGTTTTTGTCCAGTTACTCCAAGAACTATTGCAATTGGAAGCCTTCTGCAAACTATGGGAGGGTATGCTAAGCCGTATGGAAAAATGTGTGAAGATGAAAATTCGGGGAAGGAGAAGTGAGAAGCTTCAGGAGCTTGTGCCTGATCTTCTGAAGAACACTTTGCTTGTTATGAAAGCTGGGGGCATTCTAGTGCACAGCAGTGGCTCAGGAGATAATAGTTTGTGGGAACTGACATGGCAACATACGAAGAATATTGGGCCCTCATTGCAGTCTGAGGTGTTCCCTGAGCAAGATTCAGAGCAGTTACAGATTCAGCACAAACAGATTGAACCAGTTGGAAGCTTGGGACCTGATGCAAACATTTCTGTTCCTTCAAATGAAAAAGTGGGCCAAGATGGTGCTATGATCAGTTAA 4422 0.4111 MGHLKMQMQTGLNPTEDEYMQCDAGYPNKTTIVCMINAEIGAVLAVMRRNVRWGVHYMSDDDQSEHFLVQSLKKLRRQVFSWQNQWHAINPALYLQPFLDVIRSDETSAPITGVALSSVYKILTLDVIDQHTVNVGDTMHLVVEAVTSCRFEVTDPGSEEVVLMKILQVLLACVKGKASVMLSNQHICTIVNTSFRIVHQAGTKGELLQHIARYTMHELVRSIFSHLQNIDNTESAFINGTATLKQETNGLNNEHALASGQLENGRLNSARDAQPLSTGIASSTATDVTAVVIDENTAIASSGNEIDPQELQLLTEPYGVPCMVEIFHFLCSLLNVAEHMGVNPRSNTIAFDEDVPLFALNLVNTAIELGGPSFRCHPRLLSLIQDELFRNLMQFGLSMSPLVLSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQRKYGASYQQQEVVMEALVDFCRQKTFMVEMYANFDCDISCSNVFEDIANLLSKSAFPVNNPLSSIHVLALDGLIAVMQGMAERIGSRSLSSEQSPVNFVEYTPFWMEKCDSFGDPNDWVPFVRRRKYIKRRLMIGADHFNRDDKKGLEFLQGTHLLPIKLDPHSVACFLRYTAGLDKNLIGDFLGNHDELCVQVLHEFARTFDFRDMTLDTALRVFLETFRLPGESQKIHRVLEAFSERYYEQSPHILANKDAALVLSYSIILLNTDHHNMQVKKKMTKEDFIRNNRHINDGSDLPREFLSEIYHSICKNEIRTTPEPGFGFPEMTPSRWISLMHKSKKTAPFIVSDSRAYLDYDMFLLLSGPTIAAISVVFDNAENEEVYQTCMDGFLAVAKISAYYHLENVLDDLVVCLCKFITILDPLSVEESVLAFGDDTKARMATETVFTIANRYGDYIRTGWRNILECILIFHKLGLLPTWLASDAADESHVTTETGHGRSNSNSLSSTHLQYITPKRPFGLISRFSQLLYLGAEEAGSIPTEEQLVAHQQATQAIHKCHIDSVFTESKFLQAESLLHLAKALISAGAQHLKGSRISEDEVTSVFCLELLVTITLNNRDRVGLLWKDVYEHISNIVQSTVMPCALVERAIFGLLRICHRLLPYKENITDELLRSLLLVLKLDAQVADAYYEQITQEVNRLVKENASHIRSQSGWRTISSLLSITARHLEASGAGFDALIFIMSDGAHLLPANYVLCVDVARQFAESRVGLVDRSIVALDLMAGSVNCLEKWSNNAKKAVKEDEVEKMLQDIGEMWFRLVQGLRKVCLDQREEVRNHAVLSLQQCLTGAVGTHIPRKLWLTCFDQVIFTVLDDLLEIAQAHSQKDCRNIEGTLVISLTLLSKVFVQLLQELLQLEAFCKLWEGMLSRMEKCVKMKIRGRRSEKLQELVPDLLKNTLLVMKAGGILVHSSGSGDNSLWELTWQHTKNIGPSLQSEVFPEQDSEQLQIQHKQIEPVGSLGPDANISVPSNEKVGQDGAMIS* 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1306 1473 MobiDBLite consensus disorder prediction 1451 1473 - -
Gso13g1306 1473 SMART sec7_5 564 751 IPR000904 GO:0005085|GO:0032012
Gso13g1306 1473 Pfam Sec7 domain 568 751 IPR000904 GO:0005085|GO:0032012
Gso13g1306 1473 Gene3D - 644 758 IPR023394 -
Gso13g1306 1473 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 321 482 IPR032691 -
Gso13g1306 1473 Gene3D - 561 643 - -
Gso13g1306 1473 CDD Sec7 568 751 IPR000904 GO:0005085|GO:0032012
Gso13g1306 1473 PANTHER PATTERN FORMATION PROTEIN GNOM PROTEIN 11 1464 - -
Gso13g1306 1473 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11 1464 - -
Gso13g1306 1473 SUPERFAMILY Sec7 domain 565 753 IPR035999 GO:0005085|GO:0032012
Gso13g1306 1473 ProSiteProfiles SEC7 domain profile. 560 749 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1306 Gso-Chr13 28471225 28478926 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1306 K18443 - gmx:100789674 2905.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0571 14 5481382 5488801 Gso13g1306 13 28471225 28478926 PCT
Gso2g2127 2 45914686 45921719 Gso13g1306 13 28471225 28478926 PCT