Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1292 ATGTTCTCCATTCTCCTCCTCCTTCTTCCTCCTCTAACAATCACTCTTTTCACCGTTTTCCTCCAAATCCAAACCACCTCTTCTCTCTCCTCTTCCCTCCAAACCCCTCTCATATTGCCTCTTAAAACACAAACACTCCCATATGGCTTAGTTTCACTTCCAACACCATCGTCCACACGTAAGGTCTCATTCTACCACAACGTAACCTTAACCGTTTCACTAACCGTAGGCACGCCCCCACAGAGCGTTACCATGGTCCTCGACACAGGCAGCGAGCTCTCCTGGCTCCACTGCAAAAAACAACAAAACATTAACTCAGTTTTCAACCCACATCTATCTTCCTCCTACACCCCAATACCATGCATGTCTCCTATCTGCAAGACTCGAACTCGAGACTTTTTGATACCCGTTTCGTGCGACTCAAATAACCTCTGCCACGTCACCGTCTCCTACGCCGACTTCACCTCCTTGGAGGGCAACCTCGCCTCAGACACGTTCGCCATATCCGGGTCGGGTCAACCGGGAATTATATTCGGGAGCATGGATTCCGGGTTCAGCTCCAACGCAAACGAAGACTCCAAAACAACCGGGTTAATGGGCATGAACCGAGGGTCGCTCTCGTTTGTGACCCAAATGGGGTTTCCGAAATTCTCGTACTGCATCTCCGGCAAAGATGCTTCCGGCGTGTTACTCTTCGGCGACGCCACGTTCAAGTGGCTTGGACCGTTAAAGTACACTCCTTTGGTGAAAATGAATACCCCATTACCCTACTTCGACCGGGTCGCGTACACGGTTCGGTTAATGGGCATTCGGGTCGGGTCAAAACCGCTACAGGTTCCAAAGGAAATCTTCGCGCCAGATCATACCGGGGCGGGTCAGACAATGGTTGATTCGGGTACTCGATTCACTTTTCTTCTCGGTTCGGTTTACACTGCTTTGAGGAACGAGTTTGTGGCGCAGACGAGAGGGGTGTTGACCCTTTTGGAGGATCCGAATTTCGTGTTTGAAGGGGCGATGGATCTGTGCTTTAGGGTTAGAAGAGGGGGTGTTGTGCCGGCGGTGCCGGCGGTGACGATGGTGTTTGAAGGGGCGGAGATGAGTGTTTCCGGTGAGAGGTTACTGTATCGGGTGGGGGGTGATGGTGACGTGGCGAAAGGGAATGGTGACGTGTACTGTTTGACGTTTGGGAATTCGGACTTGTTAGGGATTGAGGCTTACGTGATTGGACACCATCATCAGCAAAACGTGTGGATGGAGTTTGACTTGGTCAACTCCAGGGTTGGATTTGCTGACACCAGGTGTGAACTTGCCAGTCGAAGACTTGGTTTGGATTCATAA 1338 0.5112 MFSILLLLLPPLTITLFTVFLQIQTTSSLSSSLQTPLILPLKTQTLPYGLVSLPTPSSTRKVSFYHNVTLTVSLTVGTPPQSVTMVLDTGSELSWLHCKKQQNINSVFNPHLSSSYTPIPCMSPICKTRTRDFLIPVSCDSNNLCHVTVSYADFTSLEGNLASDTFAISGSGQPGIIFGSMDSGFSSNANEDSKTTGLMGMNRGSLSFVTQMGFPKFSYCISGKDASGVLLFGDATFKWLGPLKYTPLVKMNTPLPYFDRVAYTVRLMGIRVGSKPLQVPKEIFAPDHTGAGQTMVDSGTRFTFLLGSVYTALRNEFVAQTRGVLTLLEDPNFVFEGAMDLCFRVRRGGVVPAVPAVTMVFEGAEMSVSGERLLYRVGGDGDVAKGNGDVYCLTFGNSDLLGIEAYVIGHHHQQNVWMEFDLVNSRVGFADTRCELASRRLGLDS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1292 445 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 14 443 - -
Gso13g1292 445 CDD pepsin_A_like_plant 69 434 IPR034161 -
Gso13g1292 445 Gene3D Acid Proteases 240 438 IPR021109 -
Gso13g1292 445 Pfam Xylanase inhibitor C-terminal 262 430 IPR032799 -
Gso13g1292 445 ProSiteProfiles Peptidase family A1 domain profile. 70 430 IPR033121 -
Gso13g1292 445 SUPERFAMILY Acid proteases 65 434 IPR021109 -
Gso13g1292 445 Pfam Xylanase inhibitor N-terminal 71 234 IPR032861 -
Gso13g1292 445 Gene3D Acid Proteases 59 233 IPR021109 -
Gso13g1292 445 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 85 96 IPR001969 GO:0004190|GO:0006508
Gso13g1292 445 PANTHER ASPARTYL PROTEASE-RELATED 14 443 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1292 Gso-Chr13 28332754 28334886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1292 71 435 Miscellaneous Gene Families AT1G44130 25.065 3.07e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1292 - - gmx:100783835 849.736