Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1274 ATGGGAGATCCAGCAGAAAGGTTGGGATCGGAAGGATTGGATTCCGGCGCCGCCGTCAAGACCGACGACCTGTGCATGGAAATCGATCCGCCATTTCAGGAAAACGTTGCCACCGCCGAGGACTGGCGCAAAGCTCTTAACAGAGTCGTCCCCGCCGTCGTCGTCCTCCGCACCACCGCCACCCGCTCCTTCGACACTGAGTCCGCCGCCGCCAGCTACGCCACCGGTTTTGTCGTCGACAAGCGCCGCGGCATCATCCTCACCAATCGCCACGTCGTCAAGCCAGGTCCGGTGGTTGCAGAAGCGATGTTTCTGAACCGCGAAGAGGTTCCGGTGCATCCGATTTACAGAGATCCGGTACATGATTTTGGGTTCTTTTGTTATGATCCTGGCGCTATACAATTTCTGAACTATGAGGAGATACCTCTTGCTCCTGAAGCTGCCTGTGTAGGACTAGAAATCAGAGTTGTTGGTAATGATAGTGGTGAAAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGATTGGATAGGGATGCTCCTCATTATAAGAAGGATGGGTATAATGACTTCAACACATTTTATATGCAAGCAGCATCTGGGACCAAAGGAGGGTCAAGTGGTTCCCCAGTTATAGATTGGCAAGGCAGGGCAGTGGCCCTCAATGCTGGGAGCAAGTCATCAAGTGCATCAGCATTCTTTCTACCTCTAGAACGAGTTGTGAGGGCATTAAGGTTTCTTCAAAAGGAAAGTGAAACTTATGTTGATAAATGGAAGGCAGTTTCTATACCTCGTGGTACGCTTCAGATGACATTTCTCCATAAAGGGTTTGATGAGACTCGTCGACTTGGCCTTAGAAGTGAGACAGAGCAGATAGTCCGTCATGCTTCTCCAGCTGGTGAAACTGGAATGCTTGTTGTGGACTCTGTGGTGAACAAATTGTTATGTGGTCCGGGTTATAAACATTTGGAACCGGGTGATGTACTTGTTCGTGTCAATGGAGAAGTCATTACTCAATTCCTGAAACTGGAGACTCTACTTGATGACAGTGTAAACAAGAATATTGAATTACAAATTGAAAGGGGTGGCACATCAAAAAGTTTAACTTTGTTGGTGCAAGATTTGCACTCAATAACGCCTGATTATTTCTTAGAAGTTAGTGGGGCAGTAATACATCCTCTTTCTTATCAGCAGGCTAGAAACTTCCGTTTCCATTGTGGGCTTGTTTATGTGGCCGAACCAGGATATATGCTCTTCAGAGCAGGAGTTCCTCGCCATGCAATAATTAAGAAATTTGCTGGTGAAGAAATATCATGTCTTGACGAACTGATATCAGTTCTTTCTAAGCTATCCAGGGGTGCTCGAGTACCATTGGAATATATAAGCTACATGGATCGTCATCGAAGGAAGTCTGTGTTAGTGACGGTTGATCGGCATGAATGGTATGCACCACCTCAGATATACACTCGTGATGACAGTACTGGTCTTTGGAATGCTAAGCCTGCTTTTAAGCTTGATTCCTCCTTCCTATCATTGGGTGCTAAAGATGTTGAAAATCTATCTAGACAGTCAGTTTCACTAACTGGTGAGCATGCTTGTGGGGGACATGTGTGTGGAGATAACAGTCAGGAGTTGGTTGATGGTGTCACTAGCATGGAAACCAATTGTGAAGATCCCTCAGAGTGTGTATCTCACCACAATGCATCTGATGGTGTGGTGAAAAAACGAAAAGTGGATGAAGATTTATCAGCTGATGGAAATGTTGTTGCTGATTTTTCCTTAAATGACTCAAGGGAAACTAAGCTAGAAAAATCAAGTATTATACAGGATGACATGTTAATGGACTATCAGGGTGCAACTGCAGCTACAGCAAATGCATCAGTTGCTGAACGTGTGATCGAGCCTACTCTTGTGATGTTTGAGGTTCATGTTCCCCCATCTTGTATGCTTGATGGTGTTCATTCACAGCACTTTTTTGGAACTGGTGTCATAATTTATCATTCCCAAGATATGGGATTAGTTGCAGTTGACAAGAATACAGTTGCAATATCTGCTTCTGATGTAATGCTATCTTTCGCCGCCTTCCCAGTTGAAATTCCAGGAGAGGTGGTATTTCTCCATCCTGTTCACAATTATGCCCTTATATCATATGATCCCTCTGCATTGGGACCTGTTGGGGGTTCAGTTGTTCGTGCTGCAGAGTTACTTCCAGAGCCAGCATTACGCCGGGGGGATTCTGTTTATCTTGTGGGGTTGAGTAGAAGTCTGCAAGCAACTTCTAGGAAATCAGTTGTTACCAATCCTTGTGCTGCATTAAATATAGGATCTGCTGATTCCCCTCGCTATAGAGCAACCAATATGGAAGTAATTGAGCTTGATACAGATTTTGGCAGTACATTTTCGGGTGTGCTAACAGACGAACAAGGAAGGGTCCAAGCTATATGGGGAAGCTTCTCAACTCAGAAGAAGTACAAGAGAAGAAAGATGAAAACTAGAAAGAGACGAGAGAAGACAAATTTTACACAAACCTCAAAAGGCTACCTGATGCTGAAATTTGGTTGCAGCACCTCAGAAGATCATCAATTTGTGAGGGGTATTCCAATTTATGCAATAAGTCAGGTTCTTGACAAGATTATATCAGGTGCAAATGGGTCACCTCTTCTTATAAATGGTGTCGAAAGGCCTATGCCACTTGTGAGAATTCTAGAGGTTGAACTTTATCCAACATTGCTTTCAAAGGCTCGGAGTTTTGGATTAAGTGATGATTGGATTCAAGCACTTGTTAAGAAAGATCCAGTAAGACGTCAGGTTTTACGTGTTAAAGGTTGTTTGGCTGGATCAAAGGCTGAGAATCTTTTAGAACAAGGGGATATGGTTTTAGCAATCAACAAAGAACCAGTCACATGCTTCCGTGACATTGAAAATGCTTGCCAAGCTTTAGACAAATCCGACGCCAATGATGGGAAGCTTCACTTGACTATTTTCCGGCAGGGACAAGAGGTTGAACTTTTTGTGGGAACAGATGTTAGGGATGGAAATGGCACTGCTCGTGCAATTAATTGGTGTGGTTGTATTGTCCAAGATCCACATCCAGCAGTGCGTGCTCTTGGATTTCTTCCCGAAGAAGGTCATGGTGTATATGTGGCAAGGTGGTGCCATGGGAGTCCTGTACATAGGTATGGTCTATATGCTCTTCAGTGGATAGTCGAAATTAATGGAAAACCAACTCCAAATATAGATTCTTTCGTTAAAGTGACAAAGGAACTAGAACATGGCGAGTTTGTTCGTGTAAGGACAATTCACCTCAATGGGAAGCCACGAGTCCTAACATTGAAGCAAGATTTGCATTACTGGCCAACGTGGGAATTGAGATTTAATCCTAATAGTGCGATGTGGCATCGCAATATAATCAAGGGATTGAACTGCAGTTCTGTATGA 3435 0.4413 MGDPAERLGSEGLDSGAAVKTDDLCMEIDPPFQENVATAEDWRKALNRVVPAVVVLRTTATRSFDTESAAASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFCYDPGAIQFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQKESETYVDKWKAVSIPRGTLQMTFLHKGFDETRRLGLRSETEQIVRHASPAGETGMLVVDSVVNKLLCGPGYKHLEPGDVLVRVNGEVITQFLKLETLLDDSVNKNIELQIERGGTSKSLTLLVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFHCGLVYVAEPGYMLFRAGVPRHAIIKKFAGEEISCLDELISVLSKLSRGARVPLEYISYMDRHRRKSVLVTVDRHEWYAPPQIYTRDDSTGLWNAKPAFKLDSSFLSLGAKDVENLSRQSVSLTGEHACGGHVCGDNSQELVDGVTSMETNCEDPSECVSHHNASDGVVKKRKVDEDLSADGNVVADFSLNDSRETKLEKSSIIQDDMLMDYQGATAATANASVAERVIEPTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYHSQDMGLVAVDKNTVAISASDVMLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPVGGSVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSTFSGVLTDEQGRVQAIWGSFSTQKKYKRRKMKTRKRREKTNFTQTSKGYLMLKFGCSTSEDHQFVRGIPIYAISQVLDKIISGANGSPLLINGVERPMPLVRILEVELYPTLLSKARSFGLSDDWIQALVKKDPVRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTCFRDIENACQALDKSDANDGKLHLTIFRQGQEVELFVGTDVRDGNGTARAINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPNIDSFVKVTKELEHGEFVRVRTIHLNGKPRVLTLKQDLHYWPTWELRFNPNSAMWHRNIIKGLNCSSV* 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1274 1144 Gene3D - 146 256 IPR043504 -
Gso13g1274 1144 Gene3D - 29 132 IPR043504 -
Gso13g1274 1144 Pfam Trypsin-like peptidase domain 74 220 - -
Gso13g1274 1144 SUPERFAMILY PDZ domain-like 316 406 IPR036034 GO:0005515
Gso13g1274 1144 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 21 825 - -
Gso13g1274 1144 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 848 1139 - -
Gso13g1274 1144 Gene3D - 1017 1115 IPR036034 GO:0005515
Gso13g1274 1144 Pfam PDZ-like domain 376 449 IPR025926 -
Gso13g1274 1144 Pfam PDZ-like domain 1015 1090 IPR025926 -
Gso13g1274 1144 SUPERFAMILY PDZ domain-like 1042 1123 IPR036034 GO:0005515
Gso13g1274 1144 SMART pdz_new 912 997 IPR001478 GO:0005515
Gso13g1274 1144 SMART pdz_new 280 362 IPR001478 GO:0005515
Gso13g1274 1144 SMART pdz_new 1033 1102 IPR001478 GO:0005515
Gso13g1274 1144 PANTHER PROTEASE DO-LIKE 7 848 1139 - -
Gso13g1274 1144 PANTHER PROTEASE DO-LIKE 7 21 825 - -
Gso13g1274 1144 SUPERFAMILY Trypsin-like serine proteases 635 821 IPR009003 -
Gso13g1274 1144 Gene3D - 292 380 IPR036034 GO:0005515
Gso13g1274 1144 SUPERFAMILY PDZ domain-like 938 1040 IPR036034 GO:0005515
Gso13g1274 1144 SUPERFAMILY Trypsin-like serine proteases 40 244 IPR009003 -
Gso13g1274 1144 Gene3D - 936 1009 IPR036034 GO:0005515
Gso13g1274 1144 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Gso13g1274 1144 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Gso13g1274 1144 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Gso13g1274 1144 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Gso13g1274 1144 PRINTS HtrA/DegQ protease family signature 321 333 IPR001940 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1274 Gso-Chr13 28028920 28053354 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1274 K22686 - gmx:100809144 2194.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0343 18 3220927 3238186 Gso13g1274 13 28028920 28053354 GST