Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1249 ATGTCTCTGCGTGTGGCGGCAGCAAGTTTGCTAAAAAAACTTCGCTTTCCGGCTTCACATTTCTTTGCTGCGTCTACAGCAACCACAAATGCATTTTCCGGTAAACTCAAACTTTTCCGTTGGTATCAAACTGGTGCACATGGTTGTAGGATAGATCTCAGGGATCCTTGTCTATGGATTGTTATGTCTGGACATGTAGCAATGACTTTAGGAATTAGTGCCAGCACTGTATTTGCAGAAGATGCAACAACTGAAGCATCTTCTGATAATGACCCAGGGGGTGACTTAATCGGATTGAGAAAAATTGAGGATGACTCTGTAGTATCAAACATACATACAGCAAAATGGAGAGTCTTTACAGATAAAGCGAGACAATTTTTTCTTCAGGGAAAACTAGATGAAGCTGAAAAACTCTTCCTTTCTGCTATAGAAGAAGCTAAAGAAGGTTTTGGCGAGAAAGACCCGCATGTTGCTTCTGCATGCAACAATCTGGCAGAATTGTACAGGGTCAAAAAGGCATTTGACAAAGCAGAACCCTTGTATTTGGAAGCTATCAACATATTAGAGGAATCTTTTGGTCCTGATGATGTACGGGTTGGGGTTGCTGTTCACAACCTTGGGCAGTTCTACCTTGGACAGCGGAAGTTGGAAGAAGCTCGTGTTAGCTATGAGCGTGCTTTGAAGATAAAAAGGCGTGTTCTGGGGTATGGCCATTCAGAATGTTCAGATACAATGTATCATCTAGGAGTGGTACTGTATCTTCAAGGAAAAGAAAGGGATGCTGAGGCCCTTATTAAGGACTCTATAAGGATGCTAGAGGAAGGTGGTGAAGGAGAGTCTTTTGTATGCATTAGAAGACTACGATACCTTTCACAGATATATATGAAGTCACATCGAATTGCTGAAGCTGAAATGGTCCAGAGAAAGATCCTGCATGTTATGGAATTGTCAAAGGGATGGTATTTCTTGGACACTGTTATTGCAGCTGAATCTTTGGCTCTGACCCTGCAAGCATCTGGCAATACAAAAGATTCTAAAGAGCTTCTTGAAAGATGTCTTAATGTCCGGAAGGACTTACTTCCCAGTGACCATATTCAGATAGGTGCAAACTTACTTCATCTAGCAAGAGTGGCAATGCTTGATTGCAGTCAACATAAAAAGTTGGATGTTTCTAGAGCTAAAGCTGAGCTTGATATGGCAAAGAATCATTTGTATAATTCCATAAGGATTTCACGTCAATGTTTGGAGAAGGTATTGAAACAAAAGGACAAGTTAAAGAAATTCAGTAAGCCTGGAGATTCTAGAAAGGAAGGCCAAGTAGCACTGGCCATATTGTTGCAATCACTCTATACGTTGTCATCAGTGGAGTTAGATAAGCAAGAATTGCAGGAGATTCAGGAAAGAGATAATATTAACATCGAGGCTCAGGAGGCACTTCTTCAATGCATTTCTACTTACAAGGAGTTTGTACATAAGAGGTCAATTGCTGATACCCCTGAAATAAAGAACGAGTATCTTTCATGTTTAAAGCGCGCTCAAAATTTGTTTGGTCATAAAGTTGATGAATAG 1569 0.406 MSLRVAAASLLKKLRFPASHFFAASTATTNAFSGKLKLFRWYQTGAHGCRIDLRDPCLWIVMSGHVAMTLGISASTVFAEDATTEASSDNDPGGDLIGLRKIEDDSVVSNIHTAKWRVFTDKARQFFLQGKLDEAEKLFLSAIEEAKEGFGEKDPHVASACNNLAELYRVKKAFDKAEPLYLEAINILEESFGPDDVRVGVAVHNLGQFYLGQRKLEEARVSYERALKIKRRVLGYGHSECSDTMYHLGVVLYLQGKERDAEALIKDSIRMLEEGGEGESFVCIRRLRYLSQIYMKSHRIAEAEMVQRKILHVMELSKGWYFLDTVIAAESLALTLQASGNTKDSKELLERCLNVRKDLLPSDHIQIGANLLHLARVAMLDCSQHKKLDVSRAKAELDMAKNHLYNSIRISRQCLEKVLKQKDKLKKFSKPGDSRKEGQVALAILLQSLYTLSSVELDKQELQEIQERDNINIEAQEALLQCISTYKEFVHKRSIADTPEIKNEYLSCLKRAQNLFGHKVDE* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1249 522 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 517 - -
Gso13g1249 522 SUPERFAMILY TPR-like 115 261 IPR011990 GO:0005515
Gso13g1249 522 SMART tpr_5 326 359 IPR019734 GO:0005515
Gso13g1249 522 SMART tpr_5 242 275 IPR019734 GO:0005515
Gso13g1249 522 SMART tpr_5 200 233 IPR019734 GO:0005515
Gso13g1249 522 SMART tpr_5 158 191 IPR019734 GO:0005515
Gso13g1249 522 SMART tpr_5 116 149 IPR019734 GO:0005515
Gso13g1249 522 Pfam Tetratricopeptide repeat 159 231 - -
Gso13g1249 522 Pfam Tetratricopeptide repeat 330 365 - -
Gso13g1249 522 Gene3D Tetratricopeptide repeat domain 282 417 IPR011990 GO:0005515
Gso13g1249 522 SUPERFAMILY TPR-like 239 359 IPR011990 GO:0005515
Gso13g1249 522 Gene3D Tetratricopeptide repeat domain 113 281 IPR011990 GO:0005515
Gso13g1249 522 ProSiteProfiles TPR repeat profile. 200 233 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1249 Gso-Chr13 27645690 27657016 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1249 - - gmx:100817145 989.949