LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso13g1232	ATGAATGCTTTGATGTTTCAGCCCAATACAGCATCTTATTATCCACGTTTGGATGTCCCACAAATCAAGGCATGCAAGAGCATGCGAGAATTGAAGCAAGTGCATGCGTTTTTGGTCAAAACAGGACAAACCCATGACAATGCAATAGCAACAGAGATTCTCAGGCTCAGTGCCACCTCTGATTTTCGTGATATTGGGTATGCCCTCTCGGTGTTCGACCAATTGCCTGAACGAAATTGCTTTGCTTGGAACACTGTCATAAGGGCACTTGCTGAAACCCAAGATAGGCACTTGGATGCCTTGTTGGTTTTCTGTCAAATGCTGTCTGAGGCAACGGTGGAGCCTAACCAGTTCACTTTCCCGTCAGTGTTGAAGGCCTGTGCGGTCATGGCCAGGTTGGCAGAAGGAAAGCAGGTTCATGGGTTGCTTCTTAAGTTTGGATTGGTGGATGATGAGTTTGTTGTCACTAATTTGCTAAGAATGTATGTGATGTGTGGGAGTATGGAGGATGCTAATGTTTTGTTTTATCGGAATGTTGAGGGTGTTGATGATGTGAGGAACTTGGTGAGAGATGAGAGGGGGAGAGAGTTTAATGTGGTTTTATGCAATGTGATGGTTGATGGGTATGCAAGAGTTGGGAACCTTAAGGCTGCTAGGGAATTGTTTGACAGGATGGCTCAAAGGAGTGTGGTTTCTTGGAATGTGATGATTTCTGGGTATGCTCAAAATGGGTTTTATAAGGAGGCCATTGAGATTTTTCATAGGATGATGCAGATGGGAGACGTGTTGCCGAACCGGGTGACTTTGGTCAGTGTGCTGCCTGCGATTTCGCGTCTTGGAGTGCTGGAGTTGGGGAAATGGGTGCATTTGTACGCGGAGAAGAATAAGATTCGGATTGATGATGTGCTTGGCTCGGCTCTGGTTGATATGTATGCCAAGTGTGGGAGCATAGAGAAGGCAATTCAGGTCTTTGAGAGGCTGCCTCAAAATAATGTTATAACATGGAATGCTGTTATTGGTGGTCTTGCCATGCATGGTAAAGCCAATGATATCTTTAATTATTTGTCGAGGATGGAAAAATGTGGAATATCCCCTAGTGATGTTACTTACATAGCCATCTTGAGTGCTTGTAGCCATGCAGGTTTAGTGGACGAGGGAAGATCATTTTTTAATGACATGGTTAATAGCGTTGGATTAAAGCCTAAAATAGAACACTATGGATGCATGGTTGACCTCCTGGGTCGTGCTGGTTATCTTGAAGAAGCAGAAGAGCTTATATTGAACATGCCAATGAAACCGGATGATGTCATATGGAAGGCCTTGCTTGGTGCTTCTAAGATGCATAAAAATATCAAAATTGGTATGCGTGCTGCAGAGGTTTTAATGCAAATGGCTCCTCATGATAGTGGGGCATATGTGGCTCTCTCCAACATGTATGCCTCATCAGGGAATTGGGATGGAGTTGCGGCGGTGAGGTTAATGATGAAAGATATGGACATAAGGAAAGACCCTGGATGTAGTTGGATTGAAATCGATGGTGTTATTCATGAGTTCCTTGTTGAAGATGATTCCCATTCTAGAGCCAAAGACATACACTCAATGTTGGAGGAAATTTCAAACAAGTTGAGCTTGGAAGGTCACATGCCAGACACCACGCAAGTGTTGCTCAAGATGGATGAGAAACGTAAAGAAAGTGTGCTGCACTACCACAGTGAGAAGATTGCTGTTGCTTTTGGCTTAATTAGTACACCTCCAAAGACACCACTTTGCATTGTCAAGAATTTGCGAATTTGTGAAGATTGCCATTCCTCAATGAAATTAATCTCAAAAATGTACGAGCGTAAGATAGTTATTAGAGACAGGAAGCGTTTTCACCATTTTGAACATGGTTCATGTTCTTGTATGGACTACTGGTAG	1917	0.434	MNALMFQPNTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKRKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW*	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso13g1232	638	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	229	263	IPR002885	-
	Gso13g1232	638	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	331	365	IPR002885	-
	Gso13g1232	638	PANTHER	-	23	632	-	-
	Gso13g1232	638	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	366	401	IPR002885	-
	Gso13g1232	638	Pfam	PPR repeat	405	430	IPR002885	-
	Gso13g1232	638	Pfam	PPR repeat	231	260	IPR002885	-
	Gso13g1232	638	Pfam	PPR repeat	200	228	IPR002885	-
	Gso13g1232	638	Gene3D	Tetratricopeptide repeat domain	304	566	IPR011990	GO:0005515
	Gso13g1232	638	Pfam	PPR repeat family	331	378	IPR002885	-
	Gso13g1232	638	Pfam	E motif	448	510	IPR046848	-
	Gso13g1232	638	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	198	228	IPR002885	-
	Gso13g1232	638	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	23	632	-	-
	Gso13g1232	638	TIGRFAM	PPR: pentatricopeptide repeat domain	231	261	IPR002885	-
	Gso13g1232	638	TIGRFAM	PPR: pentatricopeptide repeat domain	333	366	IPR002885	-
	Gso13g1232	638	TIGRFAM	PPR: pentatricopeptide repeat domain	200	230	IPR002885	-
	Gso13g1232	638	TIGRFAM	PPR: pentatricopeptide repeat domain	368	401	IPR002885	-
	Gso13g1232	638	Gene3D	Tetratricopeptide repeat domain	20	173	IPR011990	GO:0005515
	Gso13g1232	638	Gene3D	Tetratricopeptide repeat domain	176	284	IPR011990	GO:0005515
	Gso13g1232	638	Pfam	DYW family of nucleic acid deaminases	546	638	IPR032867	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso13g1232	Gso-Chr13	27405760	27408032	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso13g1232	22	638	Glycoside Hydrolase	AT3G49170	33.814	1.67e-127	395

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso13g1232	-		-	gmx:100812343	1283.86