Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0208 ATGGATGCTTCTTCTTCCTCGTCGTCGACTCAACCCGAATTCGATTACTTGTTCAAGCTTCTCTTGATTGGGGATTCTGGCGTTGGCAAAAGCACCCTGCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCGGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTGCCGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTACAGAGGAGCTCAAGGAATAATTATGGTATATGATGTAACGCGGCGGGAAACCTTTACAAATCTATCTGATATATGGGCTAAAGAAATTGACTTATACTCAACAAATCAAGACTGCATCAAGATGCTTGTAGGAAACAAAGTTGATAAGGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAATATGGATGTCTGTATACTGAATGCAGTGCAAAAACCAGAGTCAATGTTGCACAGTGTTTTGATGAGCTTGTGATGAAGATTTTGGAGACACCAAGCCTCTTGGCTGAGGGCTCGTCCGGTGTGAAAAAAAACATCTTCAAGCAGAAACCCCCACAGTCTGATGCATCAAGTAGTGGCTGCTGCTCATGGTGA 648 0.4182 MDASSSSSSTQPEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKYVTMGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLYTECSAKTRVNVAQCFDELVMKILETPSLLAEGSSGVKKNIFKQKPPQSDASSSGCCSW* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0208 215 ProSiteProfiles small GTPase Rho family profile. 11 180 - -
Gso13g0208 215 SMART rab_sub_5 18 182 - -
Gso13g0208 215 PANTHER LD21953P-RELATED 9 214 - -
Gso13g0208 215 Gene3D - 11 213 IPR027417 -
Gso13g0208 215 TIGRFAM small_GTP: small GTP-binding protein domain 16 174 IPR005225 GO:0005525
Gso13g0208 215 PRINTS Transforming protein P21 ras signature 18 39 - -
Gso13g0208 215 PRINTS Transforming protein P21 ras signature 40 56 - -
Gso13g0208 215 PRINTS Transforming protein P21 ras signature 58 80 - -
Gso13g0208 215 PRINTS Transforming protein P21 ras signature 122 135 - -
Gso13g0208 215 PRINTS Transforming protein P21 ras signature 157 179 - -
Gso13g0208 215 ProSiteProfiles small GTPase Ras family profile. 7 215 IPR001806 GO:0003924|GO:0005525
Gso13g0208 215 ProSiteProfiles small GTPase Rab1 family profile. 13 213 - -
Gso13g0208 215 SMART arf_sub_2 1 183 - -
Gso13g0208 215 SMART rho_sub_3 20 182 IPR001806 GO:0003924|GO:0005525
Gso13g0208 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 190 IPR027417 -
Gso13g0208 215 SMART ras_sub_4 15 182 - -
Gso13g0208 215 Pfam Ras family 19 180 IPR001806 GO:0003924|GO:0005525
Gso13g0208 215 PANTHER BNAA05G18680D PROTEIN 9 214 - -
Gso13g0208 215 SMART ran_sub_2 23 208 - -
Gso13g0208 215 CDD Rab18 18 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0208 Gso-Chr13 11444817 11452107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0208 19 115 EF-hand Containing Proteins AT5G27540 25.773 2.16e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0208 K07910 - gmx:121173094 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1268 14 33473798 33483123 Gso13g0208 13 11444817 11452107 GST