Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0849 ATGGCTGGGATTGGATTTGAGGACTTGCTACCTGTGATGGCGAACAAGCTGGGAGGGGAGGGGCTGATGAAGGAGCTGTGCAACGGGTTCGAGCTGCTGGTGGATAAGGAGAAAGGAGTGATCACATTGGAGAGTTTGCGACGCAACGCCGCGCTTCTCGGGCTGCAGGACTTGAAGGAGGATGAGCTTGTGAGTATGATGAGGGAAGGGGACCTTGATGGAGATGGTGCACTCACCCAGATGGAGTTTTGTGTCTTGATGTTCAGGTTGAGCCCTGACTTGATGGAGGAGTCATGGTTTTGGCTTGAAGAGGCTCTCCAACATGAACTCAACAACAACAAAAACTATAACAATAACAATGATTACCACTCTTCTATTTAG 381 0.4961 MAGIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDELVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHELNNNKNYNNNNDYHSSI* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0849 126 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 3 114 - -
Gso12g0849 126 Pfam EF-hand domain pair 37 89 IPR002048 GO:0005509
Gso12g0849 126 PANTHER CALCIUM-BINDING PROTEIN KIC 3 114 IPR044205 GO:0005509
Gso12g0849 126 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Gso12g0849 126 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Gso12g0849 126 SUPERFAMILY EF-hand 4 87 IPR011992 -
Gso12g0849 126 SMART efh_1 62 90 IPR002048 GO:0005509
Gso12g0849 126 Gene3D - 4 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0849 Gso-Chr12 9289307 9290260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0849 6 116 EF-hand Containing Proteins AT4G27280 62.500 5.78e-45 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0849 K24345 - gmx:100527206 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0849 12 9289307 9290260 Gso12g0849 12 9289307 9290260 ECH