Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0847 ATGGAAACAAGATCCGCCAAACGCAAGAAGATGGCTCAAATTGTAGAGAACGATGCCAAAGCAGCCACGGATCGGATCAGTGATCTCCCTGATGCAGTTCTTCACCAAATCCTTTTCCTTCTCCCCATAAAATGTGTTGCACAAATGAGCATTCTTTCCAAGAGATGGAAGTTTCTTTGGTCCACTTTTCCCGACCTTGACTTCACAACCCTTAACCCATTTCAAATCTCTTCCCAAAGCGTCAAGTTTTTGGAGTTTGAGAAGCCAAGGCAACCTTTGGATTCATCACGAATGGATTTCATCACCCAAGTTCTCTCTATTCGTGATAAGCATTCAGATATTAGGTTTCTTTGTTTTCGTGCGCGTTTGAGTTTTTCGCGGCTGAATAGTTTGATCCGTAGGGCCATTAGGCACAACGTTAGAGAGCTTGATATTGGAGCTTCCACAGTGTGTACAGATGATTACTTCAACTTTCCTAGGTGTGTTATTGGAAGTGAAACTCTTAGGGTTTTGAAACTAAAATCAGGGTTTCGTTTGCCTCCTTCATCGGTTATGAGACATGGCTTTCAATCCCTACAAACCCTATCTCTTTCCCTAGTCATTTTGAACAACCAACCTTCTCTTCCTGATTTGTTCTCGGAATCATCTTTCCCTCTTCTCAAGACCCTAAACCTCGATTCGTGTTTGGGGTTAAAATACCTTCATGTTGGATGTAGGGCTCTTGAAGATTTGAATTTGGAGAGATGTTATGAGCTAGAGGGCTTGGATGTCTCATGTTCAAAGCTTGAGAGAATGAGATTGGCGAAGTGTTTTGATGCCTATAGTGACAAGAGTTGGGTGAAAATCAATACACCCAAGCTTGAGCGTTTGTGTTGGCAACATAATGCAATCACTGACATGACTATGTTTGGGCCTTCAAATTTGTTGAATGAGGTCACGGTTGGTTTCTATGTTTTCACTAGAGATAATATTCTGGGTAAGCTTCAAAGTGCCATTGATCTATTGTCTGGACTCTCTCATGCGCGTTCTTTGTCTCTTGAAAGGCAAACTATTGAGATCCTATCAAATAATCACCTCCTTTTTCAGCCATTTTATAATCTCAAACATTTAGAGCTGCATACTGGTTTCAACAAAAGTGATGTTCCGGGATTGACATGCCTATTCAAGAGCTCTCCCACTCTCGACACTCTGATTCTCAAGATCATTCACGAATACAGGATTGAAAGAAAAGAATGGAATAGAGACTTATGGGACATGACTATCACTGAGGGAGAGCAGTATTGGGAGTCTCAAATCCGAACTCTTGAATCTTTTCTACAACACTTGAAAGTGGTGAAAATTCATGGTTTTCTTGATTATGAGAATGAGGTTGCACTTGCAAAGTTTCTCCTCAAGCATGGGAAGGCCTTAGAAGAAATGATATTACACACAGGACATTGCAATGCAAGAGATACCCTTAGGAGACAAAAAATAAGGTCACAAATGATGGGATTTTCTTGGGCTTCTTCTAATGCAAAAGTGGCATTTCAGTAG 1533 0.4097 METRSAKRKKMAQIVENDAKAATDRISDLPDAVLHQILFLLPIKCVAQMSILSKRWKFLWSTFPDLDFTTLNPFQISSQSVKFLEFEKPRQPLDSSRMDFITQVLSIRDKHSDIRFLCFRARLSFSRLNSLIRRAIRHNVRELDIGASTVCTDDYFNFPRCVIGSETLRVLKLKSGFRLPPSSVMRHGFQSLQTLSLSLVILNNQPSLPDLFSESSFPLLKTLNLDSCLGLKYLHVGCRALEDLNLERCYELEGLDVSCSKLERMRLAKCFDAYSDKSWVKINTPKLERLCWQHNAITDMTMFGPSNLLNEVTVGFYVFTRDNILGKLQSAIDLLSGLSHARSLSLERQTIEILSNNHLLFQPFYNLKHLELHTGFNKSDVPGLTCLFKSSPTLDTLILKIIHEYRIERKEWNRDLWDMTITEGEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKALEEMILHTGHCNARDTLRRQKIRSQMMGFSWASSNAKVAFQ* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0847 510 Pfam FBD 436 475 IPR006566 -
Gso12g0847 510 SUPERFAMILY F-box domain 23 66 IPR036047 GO:0005515
Gso12g0847 510 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 22 455 - -
Gso12g0847 510 SMART 9598neu4hmm 436 510 IPR006566 -
Gso12g0847 510 Gene3D Ribonuclease Inhibitor 160 486 IPR032675 -
Gso12g0847 510 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Gso12g0847 510 Pfam F-box domain 26 61 IPR001810 GO:0005515
Gso12g0847 510 SUPERFAMILY RNI-like 128 418 - -
Gso12g0847 510 PANTHER F-BOX PROTEIN-LIKE 22 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0847 Gso-Chr12 9252319 9254819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0847 21 479 EF-hand Containing Proteins AT5G41840 24.561 9.90e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0847 - - gmx:100819136 1024.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0847 12 9252319 9254819 Gso12g0847 12 9252319 9254819 ECH