Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0843 ATGGCCACTTCCGACAGAAACATGTTACTAAATTATGTTCCAGTTTATGTGATGCTCCCACTCGGAGTTGTCACTGTTGACAATGTTTTTGAAGACCCAGATGGCCTTAAAGAACAGCTCTTGCAGCTTCGAGCCGCAGGTGTTGATGGGGTTATGGTTGATGTGTGGTGGGGGATCATAGAACTGAAGGGGCCTAAGCAGTATGATTGGAGTGCCTACAGGAGTTTGTTTCAGTTGGTTCAGGAATGTGGCTTGACACTCCAAGCTATTATGTCATTCCATCAATGTGGAGGGAACGTAGGAGATGTAGTTAACATCCCAATTCCCCAGTGGGTGCTTGACATTGGAGAATCAAATCCTGATATCTTCTACACCAACCGCTCAGGATTCAGGAATAAGGAATATCTAACTGTTGGTGTGGACAACGAGCCTATATTCCATGGAAGAACAGCCATTGAGATATACAGTGACTACATGAAGAGTTTCAGAGAAAACATGTCAGATTTTTTAGACTCTGGACTTATTATAGACATTGAAGTTGGGCTTGGCCCAGCTGGAGAGCTCAGATACCCCTCTTATCCACAAAGCCAAGGATGGGAATTTCCTGGTATTGGAGAATTTCAGTGCTATGACAAATATTTGAAGGCAGATTTCAAAGCAGCTGTAGCAAGGGCTGGCCATCCTGAATGGGAACTGCCAGATGACGCAGGCAAGTACAATGATGTCCCAGAATCTACTGGATTCTTCAAATCAAATGGCACTTATGTCACTGAAAAAGGGAAGTTCTTCTTGACCTGGTATTCTAACAAATTGCTGAACCATGGTGATCAAATACTAGATGAAGCCAACAAAGCCTTCCTGAGCTGTAAAGTCAAATTAGCAATCAAAGTATCTGGAATTCACTGGTGGTACAAAGTTGAAAATCATGCTGCTGAGCTTACAGCTGGATATTACAACCTTAATAATAGAGACGGATACCGTCCCATTGCAAGATTGCTGTCTCGCCATCATGCCATTTTGAACTTTACATGTCTTGAGATGAGGGACTCAGAACAACCCTCAGATGCCAAAAGTGGACCACAGGAGCTTGTTCAGCAGGTATTGAGTGGAGGTTGGAGAGAAGACATCCAAGTTGCTGGAGAAAATGCACTTCCAAGGTATGATGCTACAGCTTACAACCAAATCATACTGAATGCAAGACCACAAGGTGTCAACAACAATGGCCCTCCAAAACTAAGCATGTTTGGAGTAACATACCTTCGTCTATCAGATGATCTACTGCAAAAATCAAATTTTAATATGTTCAAAAAATTTGTGCTAAAGATGCATGCAGATCAGGATTACTGTGCAAACCCTCAAAAGTACAATCATGCCATAACACCATTGAAGCCATCTGCACCAAAGATTCCCCTGGAGGTTCTTCTGGAAGCGACTAAACCAATACCGCCATTCCCCTGGCTTCCAGAGACAGACATGAAAGTTGATGGTTGA 1491 0.4306 MATSDRNMLLNYVPVYVMLPLGVVTVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWSAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESNPDIFYTNRSGFRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLDSGLIIDIEVGLGPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLSCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNNRDGYRPIARLLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIQVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNMFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPLEVLLEATKPIPPFPWLPETDMKVDG* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0843 496 Gene3D Glycosidases 2 496 - -
Gso12g0843 496 PANTHER BETA-AMYLASE 6 3 491 - -
Gso12g0843 496 Pfam Glycosyl hydrolase family 14 16 438 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 47 61 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 68 86 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 90 111 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 183 205 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 274 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 291 307 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 308 319 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 326 349 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 363 385 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 PANTHER - 3 491 IPR001554 GO:0000272|GO:0016161
Gso12g0843 496 ProSitePatterns Beta-amylase active site 2. 183 193 IPR018238 GO:0000272|GO:0016161
Gso12g0843 496 SUPERFAMILY (Trans)glycosidases 9 492 IPR017853 -
Gso12g0843 496 PRINTS Plant beta-amylase signature 173 182 IPR001371 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Plant beta-amylase signature 329 339 IPR001371 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Plant beta-amylase signature 371 380 IPR001371 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Plant beta-amylase signature 385 394 IPR001371 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Plant beta-amylase signature 400 416 IPR001371 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Plant beta-amylase signature 418 432 IPR001371 GO:0000272|GO:0016161
Gso12g0843 496 PRINTS Plant beta-amylase signature 433 447 IPR001371 GO:0000272|GO:0016161
Gso12g0843 496 ProSitePatterns Beta-amylase active site 1. 94 102 IPR018238 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0843 Gso-Chr12 9187219 9190073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0843 2 494 Glycoside Hydrolase AT2G32290 69.433 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0843 K01177 - gmx:100787580 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0843 12 9187219 9190073 Gso6g2477 6 46500630 46503437 GST