Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0812 ATGTATATAACAACGGCCTCTTCGCTCCTCAGAGCAACCAGGCCTAAACTCTTCTTTCCCTCTCCTTCTAGAAACTTCGCTTCTTTCACTCCCTGCACTTCTTCCTTCTCCGCCACCGCTCGTTCCCTCCTCTGCTCCGTTCCGCGGTGGAGCCACCGCCTCCATTCCGCCTCTCCGCTCACTCCCCGTCCTCGGATCAGCGCCGTCGCCACCATGGCCAATGAAAATCCTTTCAAGGGAAACTTGACCAGTCTCCCAAAGCCTGGTGGCGGCGAGTTTGGAAAGTTCTACAGTCTTCCTTCTCTCAATGATCCGAGAATTGACAGGTTGCCATACTCCATCAGGATTCTCCTTGAATCTGCCATTCGTAATTGTGACAATTTTCAAGTAAAAAAAGAAGATGTTGAGAAGATCCTTGACTGGGAAAACAATTCTACAAAGCAAGTTGAGATTCCATTCAAGCCCGCCCGTGTTCTCTTGCAGGATTTTACTGGAGTTCCTGCTGTTGTTGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGAAGTGATTCAAATAAGATCAACCCTCTGGTTCCTGTGGATCTTGTCATTGATCATTCAGTTCAAGTTGACGTTACAAGGTCAGATAATGCAGTGCAGGCCAATATGGAGCTTGAATTTCAGAGAAACAAGGAGAGGTTTGCTTTTCTTAAATGGGGGTCAACTGCATTCCGTAACATGCTTGTTGTTCCTCCCGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGAAGGGTTGTATTCAACAATGAGGGCCTACTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACCACTATGATAGATGGGCTTGGTGTTGCTGGATGGGGAGTTGGAGGTATTGAAGCTGAGGCAGCAATGCTTGGTCAGCCTTTGAGCATGGTTTTGCCCGGTGTTGTTGGGTTCAAGTTATCTGGAAAACTACGCAATGGTGTTACAGCAACAGACTTAGTTCTAACTGTGACTCAAATTCTCAGAAAGCATGGTGTTGTGGGGAAATTTGTTGAATTTTATGGTGATGGTATGGGTGAATTATCTTTGGCTGACAGGGCCACTATTGCCAATATGTCTCCTGAATATGGTGCCACCATGGGCTTCTTCCCTGTGGATCATGTTACACTACAATATCTCAAGTTAACAGGAAGAAGTGATGAGATTGTGGCCATGATAGAGTCTTATCTCAGGGAAAACAAACTGTTTGTTGACTATAATGAGCCGCAACAAGACAGAGTGTATTCATCGTATCTTGAATTAAACCTTTCCGATGTTGAACCGTGTATTTCAGGACCAAAGAGACCCCATGATCGGGTACCTTTGAAAGAAATGAAGGCCGATTGGCATGCTTGTCTTGATAACAAAGTTGGGTTTAAGGGATTTGCTATACCAAAAGAGGCACAAGGAAAAGTTGCAAAATTTGATTTCCATGGGCAGCCAGCGGAACTCAAGCATGGCAGTGTTGTGATTGCTGCAATTACAAGCTGTACAAATACATCAAACCCAAGTGTTATGCTTGGTGCTGGTCTTGTTGCAAAAAAGGCTCATGAGCTTGGTTTACAGGTCAATCCTTGGGTTAAAACAAGTCTTGCTCCAGGCTCTGGAGTTGTTACAAAATATCTACTCCAGAGTGGACTGCAAAAATATCTAAATGAACAAGGTTTTCATATTGTTGGATTTGGCTGTACTACATGTATTGGCAATTCTGGAGAGCTGGAAGAGTCCGTTGCTTCTGCCATCTCAGAAAATGACATTGTAGCAGCTGCTGTGTTGTCTGGGAATCGTAATTTTGAGGGCCGAGTACATGCATTGACAAGAGCTAACTACCTTGCTTCTCCTCCTCTAGTTGTTGCTTATGCTCTTGCTGGCACGGTTGACATTGACTTTGAGAAGGAGCCAATTGGGACAGGGAAGGATGGAAAGAATGTCTACTTGAGGGATATTTGGCCATCTACTGAAGAAATTGCTAAGGTTGTCCAATCCAGTGTGTTGCCTGAGATGTTTCGAAGTACATATGAGGCTATTACCAAAGGGAACCCAATGTGGAATCAACTACAAGTTCCTGCTGACACTCTATACTCATGGGACCCTGACTCAACATATATCCATGAACCCCCTTACTTCAAGAGCATGACCATGGATCCTCCTGGACCTCATGGTGTAAAAGATGCTTATTGCCTACTGAATTTTGGTGACAGTATAACCACTGATCATATTTCTCCAGCTGGAAGCATTCACAAGGACAGTCCTGCTGCCAAATACCTTGTTGAGCATGGGGTGGAACGCAAGGACTTCAATTCTTATGGAAGTCGTCGAGGCAATGATGAGGTGATGGCAAGGGGGACTTTTGCCAACATTCGTCTTGTTAACAAGCTTTTGAATGGGGAAGTTGGCCCGAAGACAATTCACATTCCAACAGGGGAAAAACTTTATGTGTTTGATGCAGCTACGAGATACAAGGCTTCTGGGCAAGACACCATTGTGCTAGCTGGAGCTGAATATGGCAGTGGAAGTTCTAGAGATTGGGCTGCCAAGGGTCCAATGCTACTGGGAGTCAAAGCTGTGATAGCCAAGAGTTTCGAGAGAATTCATCGCAGTAACTTGGTAGGAATGGGTATCATTCCTCTTTGCTTCAAACCCGGTGAGGATGCGGACACATTGGGATTAACTGGTCATGAACGTTATACAATTGAACTACCAAGTATTATCAATGAGATTAGGCCTGGCCAAGATGTGACAGTCACAACCGATAATGGAAAATCTTTCACTTGCACAGCACGCTTTGACACTGAGGTCGAACTTGCTTACTTCAACCACGGAGGCATACTTCCATATGTCATAAGGAACCTCATTAAGCAGTGA 2910 0.4488 MYITTASSLLRATRPKLFFPSPSRNFASFTPCTSSFSATARSLLCSVPRWSHRLHSASPLTPRPRISAVATMANENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVKKEDVEKILDWENNSTKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSDNAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPLSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDEIVAMIESYLRENKLFVDYNEPQQDRVYSSYLELNLSDVEPCISGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVNPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGFGCTTCIGNSGELEESVASAISENDIVAAAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKNVYLRDIWPSTEEIAKVVQSSVLPEMFRSTYEAITKGNPMWNQLQVPADTLYSWDPDSTYIHEPPYFKSMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLVEHGVERKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLYVFDAATRYKASGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLTGHERYTIELPSIINEIRPGQDVTVTTDNGKSFTCTARFDTEVELAYFNHGGILPYVIRNLIKQ* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0812 969 Pfam Aconitase family (aconitate hydratase) 136 639 IPR001030 -
Gso12g0812 969 TIGRFAM aconitase_1: aconitate hydratase 1 94 967 IPR006249 -
Gso12g0812 969 CDD AcnA_IRP 157 641 - -
Gso12g0812 969 Gene3D Aconitase, domain 4 732 968 IPR015928 -
Gso12g0812 969 Pfam Aconitase C-terminal domain 768 895 IPR000573 -
Gso12g0812 969 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 55 969 IPR006249 -
Gso12g0812 969 ProSitePatterns Aconitase family signature 1. 504 520 IPR018136 -
Gso12g0812 969 PANTHER ACONITATE HYDRATASE 55 969 - -
Gso12g0812 969 SUPERFAMILY LeuD/IlvD-like 708 967 - -
Gso12g0812 969 PRINTS Aconitase family signature 218 231 IPR001030 -
Gso12g0812 969 PRINTS Aconitase family signature 242 250 IPR001030 -
Gso12g0812 969 PRINTS Aconitase family signature 271 284 IPR001030 -
Gso12g0812 969 PRINTS Aconitase family signature 285 300 IPR001030 -
Gso12g0812 969 PRINTS Aconitase family signature 347 360 IPR001030 -
Gso12g0812 969 PRINTS Aconitase family signature 361 374 IPR001030 -
Gso12g0812 969 PRINTS Aconitase family signature 443 457 IPR001030 -
Gso12g0812 969 PRINTS Aconitase family signature 508 519 IPR001030 -
Gso12g0812 969 PRINTS Aconitase family signature 570 583 IPR001030 -
Gso12g0812 969 SUPERFAMILY Aconitase iron-sulfur domain 90 704 IPR036008 -
Gso12g0812 969 Gene3D Aconitase, domain 3 75 443 IPR015931 -
Gso12g0812 969 Gene3D - 668 729 - -
Gso12g0812 969 CDD AcnA_IRP_Swivel 745 913 IPR044137 -
Gso12g0812 969 ProSitePatterns Aconitase family signature 2. 570 583 IPR018136 -
Gso12g0812 969 Gene3D Aconitase, domain 3 444 667 IPR015931 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0812 Gso-Chr12 8597705 8605939 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0812 K01681 - gmx:100778506 1926.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0812 12 8597705 8605939 Gso12g0812 12 8597705 8605939 ECH
Gso12g1636 12 39950963 39958377 Gso12g0812 12 8597705 8605939 PCT
Gso11g3230 11 48039310 48046845 Gso12g0812 12 8597705 8605939 PCT